Wall clock time and date at job start Mon Mar 30 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 120.00012 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.39736 * 119.99638 * 179.72325 * 4 2 1 6 6 C 1.34094 * 125.23782 * 180.27634 * 5 4 2 7 7 C 1.38477 * 114.74851 * 179.97438 * 6 5 4 8 8 C 1.33299 * 114.98580 * 359.97438 * 7 6 5 9 9 C 1.50697 * 125.13903 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47276 * 20.00496 * 9 8 7 11 11 N 1.46908 * 109.47106 * 140.00359 * 9 8 7 12 12 C 1.50701 * 109.47475 * 260.00228 * 9 8 7 13 13 H 1.07999 * 119.99846 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00394 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99653 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00200 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46894 * 59.99870 * 16 14 12 18 18 H 1.48498 * 109.47093 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46664 * 300.00066 * 16 14 12 20 20 S 1.75870 * 109.72556 * 359.76137 * 8 7 6 21 21 H 1.09000 * 109.47366 * 270.00438 * 1 2 3 22 22 H 1.09004 * 109.46726 * 30.00581 * 1 2 3 23 23 H 1.08998 * 109.47150 * 149.99877 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 25 25 H 1.07999 * 122.62775 * 0.02562 * 6 5 4 26 26 H 1.07997 * 122.50740 * 180.02562 * 7 6 5 27 27 H 1.00897 * 110.99491 * 296.04478 * 11 9 8 28 28 H 1.00898 * 110.99995 * 60.00443 * 11 9 8 29 29 H 0.97009 * 119.99538 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5781 -1.1673 -0.0053 6 6 4.3518 -2.2625 -0.0107 7 6 5.7134 -2.0105 -0.0165 8 6 6.0471 -0.7199 -0.0163 9 6 7.4573 -0.1887 -0.0214 10 1 8.1363 -0.9638 -0.3766 11 7 7.5380 0.9779 -0.9106 12 6 7.8462 0.2176 1.3767 13 1 7.1426 0.1023 2.1879 14 6 9.1005 0.7356 1.6205 15 7 9.9574 0.8756 0.6327 16 14 9.5827 1.2386 3.3537 17 1 9.5008 0.0592 4.2522 18 1 10.9723 1.7622 3.3486 19 1 8.6579 2.2949 3.8378 20 16 4.5929 0.2692 -0.0155 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5140 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6958 -2.0073 0.0005 25 1 3.9448 -3.2629 -0.0114 26 1 6.4498 -2.8004 -0.0216 27 1 7.3444 0.7182 -1.8662 28 1 6.9172 1.7112 -0.6023 29 1 10.8400 1.2397 0.8043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238085729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:53 Heat of formation + Delta-G solvation = -2.420404 kcal Electronic energy + Delta-G solvation = -14572.375740 eV Core-core repulsion = 12008.136207 eV Total energy + Delta-G solvation = -2564.239533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93434 -37.38804 -35.04773 -33.63616 -31.39991 -30.31207 -27.52906 -25.61341 -23.32548 -21.53707 -20.64204 -19.32722 -17.38951 -16.43199 -16.30288 -15.56774 -15.07699 -14.51707 -14.20227 -13.96889 -13.46681 -13.07882 -12.87754 -12.45420 -12.20610 -12.02967 -11.63257 -11.12376 -10.78492 -10.75509 -10.51973 -10.36631 -9.84835 -9.42277 -9.09776 -8.38647 -7.77175 -7.33918 -7.05284 -5.84285 -3.99189 1.58006 2.03238 2.56903 2.81756 3.14459 3.39318 3.43156 3.44949 3.52545 4.52755 4.59819 4.92234 5.10524 5.40683 5.51919 5.71859 5.85594 6.08879 6.30895 6.49191 6.63532 7.05523 7.11820 7.29148 7.48352 7.94363 7.98738 8.19188 8.63643 9.01020 9.16227 9.69048 11.19849 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037457 B = 0.006382 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.353191 B = 4386.362986 C = 4563.284723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.493 3.507 3 O -0.514 6.514 4 N -0.634 5.634 5 C -0.015 4.015 6 C -0.168 4.168 7 C -0.161 4.161 8 C -0.184 4.184 9 C 0.284 3.716 10 H 0.056 0.944 11 N -0.808 5.808 12 C -0.531 4.531 13 H 0.054 0.946 14 C 0.084 3.916 15 N -0.848 5.848 16 Si 0.886 3.114 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 S 0.197 5.803 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.411 0.589 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.300 0.700 28 H 0.317 0.683 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.103 -5.462 -2.438 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.281 3.719 3 O -0.390 6.390 4 N -0.279 5.279 5 C -0.226 4.226 6 C -0.203 4.203 7 C -0.190 4.190 8 C -0.305 4.305 9 C 0.172 3.828 10 H 0.073 0.927 11 N -0.334 5.334 12 C -0.570 4.570 13 H 0.073 0.927 14 C -0.123 4.123 15 N -0.482 5.482 16 Si 0.713 3.287 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 S 0.457 5.543 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.100 0.900 24 H 0.247 0.753 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.111 0.889 28 H 0.129 0.871 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.048 -3.033 -2.290 16.492 hybrid contribution -0.806 -2.129 0.876 2.439 sum -16.853 -5.162 -1.413 17.683 Atomic orbital electron populations 1.21818 0.90379 1.05174 1.05075 1.21127 0.91158 0.83205 0.76450 1.90724 1.69605 1.30741 1.47951 1.42894 1.03346 1.09690 1.71975 1.22071 0.86482 1.00131 1.13933 1.19738 0.93450 0.97008 1.10140 1.19628 0.94402 0.96660 1.08263 1.27266 1.03366 0.97403 1.02468 1.17846 0.81831 0.89366 0.93740 0.92679 1.59186 1.60062 1.11237 1.02906 1.20820 0.99211 1.45319 0.91642 0.92748 1.24940 0.96305 0.94828 0.96212 1.70095 1.05693 1.42162 1.30263 0.86788 0.77479 0.78983 0.85410 1.20347 1.21307 1.20236 1.85000 0.92861 1.03833 1.72621 0.88517 0.88407 0.90012 0.75292 0.85646 0.85103 0.88942 0.87060 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.30 36.00 0.37 -0.79 15 2 C 0.49 6.40 7.90 -10.99 -0.09 6.31 15 3 O -0.51 -9.17 14.63 5.54 0.08 -9.09 15 4 N -0.63 -8.01 5.43 -10.75 -0.06 -8.06 15 5 C -0.01 -0.25 7.17 -15.40 -0.11 -0.36 15 6 C -0.17 -2.82 10.20 -40.95 -0.42 -3.23 15 7 C -0.16 -3.17 10.03 -41.22 -0.41 -3.58 15 8 C -0.18 -4.06 5.38 -36.03 -0.19 -4.25 15 9 C 0.28 7.24 3.05 -70.01 -0.21 7.02 15 10 H 0.06 1.52 8.12 -51.93 -0.42 1.10 15 11 N -0.81 -19.76 8.46 -6.65 -0.06 -19.82 15 12 C -0.53 -14.96 8.71 -34.44 -0.30 -15.26 15 13 H 0.05 1.55 7.74 -52.49 -0.41 1.15 15 14 C 0.08 2.39 5.39 -17.82 -0.10 2.29 15 15 N -0.85 -24.99 12.77 55.43 0.71 -24.29 15 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 20 S 0.20 3.98 19.64 -107.50 -2.11 1.87 15 21 H 0.10 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.10 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 15 24 H 0.41 3.41 8.81 -40.82 -0.36 3.05 15 25 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.13 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.30 6.58 9.06 -39.29 -0.36 6.22 15 28 H 0.32 7.62 8.31 -39.29 -0.33 7.29 15 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 270.82 15.07 4.08 4.08 Total: -1.00 -33.46 270.82 -6.96 -40.42 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.12 Total: 9.94 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.46 Total: -11.85 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.59 Total: -52.17 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -2.11 Total: 1.87 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.46 -6.96 -40.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238085729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.995 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds