Wall clock time and date at job start Mon Mar 30 2020 04:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21303 * 120.00012 * 2 1 4 4 N 1.34777 * 119.99538 * 179.97438 * 2 1 3 5 5 C 1.39736 * 119.99638 * 179.72325 * 4 2 1 6 6 C 1.34094 * 125.23782 * 180.27634 * 5 4 2 7 7 C 1.38477 * 114.74851 * 179.97438 * 6 5 4 8 8 C 1.33299 * 114.98580 * 359.97438 * 7 6 5 9 9 C 1.50697 * 125.13903 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47276 * 20.00496 * 9 8 7 11 11 N 1.46908 * 109.47106 * 140.00359 * 9 8 7 12 12 C 1.50701 * 109.47475 * 260.00228 * 9 8 7 13 13 H 1.07999 * 119.99846 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00394 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99653 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00200 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46894 * 59.99870 * 16 14 12 18 18 H 1.48498 * 109.47093 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46664 * 300.00066 * 16 14 12 20 20 S 1.75870 * 109.72556 * 359.76137 * 8 7 6 21 21 H 1.09000 * 109.47366 * 270.00438 * 1 2 3 22 22 H 1.09004 * 109.46726 * 30.00581 * 1 2 3 23 23 H 1.08998 * 109.47150 * 149.99877 * 1 2 3 24 24 H 0.97001 * 120.00485 * 0.02562 * 4 2 1 25 25 H 1.07999 * 122.62775 * 0.02562 * 6 5 4 26 26 H 1.07997 * 122.50740 * 180.02562 * 7 6 5 27 27 H 1.00897 * 110.99491 * 296.04478 * 11 9 8 28 28 H 1.00898 * 110.99995 * 60.00443 * 11 9 8 29 29 H 0.97009 * 119.99538 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5781 -1.1673 -0.0053 6 6 4.3518 -2.2625 -0.0107 7 6 5.7134 -2.0105 -0.0165 8 6 6.0471 -0.7199 -0.0163 9 6 7.4573 -0.1887 -0.0214 10 1 8.1363 -0.9638 -0.3766 11 7 7.5380 0.9779 -0.9106 12 6 7.8462 0.2176 1.3767 13 1 7.1426 0.1023 2.1879 14 6 9.1005 0.7356 1.6205 15 7 9.9574 0.8756 0.6327 16 14 9.5827 1.2386 3.3537 17 1 9.5008 0.0592 4.2522 18 1 10.9723 1.7622 3.3486 19 1 8.6579 2.2949 3.8378 20 16 4.5929 0.2692 -0.0155 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5140 23 1 -0.3633 -0.8899 -0.5138 24 1 1.6958 -2.0073 0.0005 25 1 3.9448 -3.2629 -0.0114 26 1 6.4498 -2.8004 -0.0216 27 1 7.3444 0.7182 -1.8662 28 1 6.9172 1.7112 -0.6023 29 1 10.8400 1.2397 0.8043 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238085729.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:53 Heat of formation + Delta-G solvation = -28.314203 kcal Electronic energy + Delta-G solvation = -14573.498579 eV Core-core repulsion = 12008.136207 eV Total energy + Delta-G solvation = -2565.362372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04474 -38.86494 -36.66527 -35.18580 -33.42814 -31.20839 -29.06919 -27.54080 -24.87722 -23.08605 -22.00464 -20.69398 -18.69558 -18.44337 -17.59925 -16.76338 -16.58739 -16.32868 -15.89682 -15.46919 -14.85617 -14.48715 -14.09783 -13.81717 -13.52812 -13.28940 -13.07489 -12.86934 -12.68265 -12.60636 -12.02683 -11.84893 -11.67433 -11.10589 -10.80244 -10.54370 -9.33573 -9.07161 -8.67510 -7.99251 -6.21909 0.16909 0.59076 1.32330 1.40986 1.43434 1.45280 1.51520 2.06630 2.08849 2.46858 3.23440 3.82113 4.34981 4.38001 4.47380 4.52514 4.63638 4.67620 4.99019 5.10600 5.19326 5.30476 5.62681 5.71596 5.75613 6.11574 6.30542 6.59014 7.00103 7.01118 7.18337 7.49896 9.03221 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037457 B = 0.006382 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.353191 B = 4386.362986 C = 4563.284723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.486 3.514 3 O -0.567 6.567 4 N -0.621 5.621 5 C 0.005 3.995 6 C -0.168 4.168 7 C -0.151 4.151 8 C -0.225 4.225 9 C 0.290 3.710 10 H 0.023 0.977 11 N -0.817 5.817 12 C -0.545 4.545 13 H 0.043 0.957 14 C 0.036 3.964 15 N -0.879 5.879 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.276 1.276 20 S 0.159 5.841 21 H 0.117 0.883 22 H 0.100 0.900 23 H 0.119 0.881 24 H 0.435 0.565 25 H 0.170 0.830 26 H 0.135 0.865 27 H 0.312 0.688 28 H 0.318 0.682 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.747 -6.784 -1.859 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.276 3.724 3 O -0.447 6.447 4 N -0.269 5.269 5 C -0.208 4.208 6 C -0.202 4.202 7 C -0.181 4.181 8 C -0.346 4.346 9 C 0.178 3.822 10 H 0.041 0.959 11 N -0.343 5.343 12 C -0.584 4.584 13 H 0.061 0.939 14 C -0.168 4.168 15 N -0.515 5.515 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.201 1.201 20 S 0.418 5.582 21 H 0.135 0.865 22 H 0.118 0.882 23 H 0.137 0.863 24 H 0.277 0.723 25 H 0.188 0.812 26 H 0.153 0.847 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.734 -4.404 -1.710 19.320 hybrid contribution -0.137 -1.773 0.654 1.894 sum -18.870 -6.177 -1.056 19.884 Atomic orbital electron populations 1.21883 0.85153 1.07162 1.06905 1.22367 0.93484 0.82137 0.74406 1.90709 1.71028 1.32724 1.50219 1.43011 1.01356 1.11277 1.71210 1.22101 0.88639 0.98217 1.11821 1.19949 0.91821 0.98887 1.09553 1.19940 0.96313 0.95813 1.06027 1.26737 1.02356 0.98705 1.06782 1.17416 0.83643 0.88670 0.92451 0.95922 1.59036 1.60394 1.11272 1.03609 1.21095 0.99214 1.45257 0.92841 0.93876 1.25680 0.96297 0.94870 0.99954 1.70215 1.05945 1.43106 1.32188 0.85797 0.77222 0.78677 0.80921 1.19596 1.20611 1.20127 1.85125 0.93363 1.05939 1.73739 0.86497 0.88174 0.86295 0.72326 0.81231 0.84689 0.87641 0.87006 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.30 71.24 0.73 -0.76 15 2 C 0.49 11.31 7.90 87.66 0.69 12.00 15 3 O -0.57 -19.79 14.63 -3.10 -0.05 -19.84 15 4 N -0.62 -13.55 5.43 -306.31 -1.66 -15.21 15 5 C 0.01 0.17 7.17 82.49 0.59 0.76 15 6 C -0.17 -5.17 10.20 21.38 0.22 -4.95 15 7 C -0.15 -5.86 10.03 21.21 0.21 -5.65 15 8 C -0.23 -10.15 5.38 24.57 0.13 -10.01 15 9 C 0.29 15.36 3.05 43.42 0.13 15.49 15 10 H 0.02 1.33 8.12 -2.39 -0.02 1.31 15 11 N -0.82 -41.49 8.46 -174.95 -1.48 -42.97 15 12 C -0.55 -31.62 8.71 25.60 0.22 -31.40 15 13 H 0.04 2.53 7.74 -2.91 -0.02 2.51 15 14 C 0.04 2.08 5.39 84.65 0.46 2.53 15 15 N -0.88 -53.05 12.77 21.45 0.27 -52.78 15 16 Si 0.95 45.46 29.54 68.60 2.03 47.48 15 17 H -0.27 -12.56 7.11 99.48 0.71 -11.86 15 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 15 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 20 S 0.16 6.50 19.64 -56.49 -1.11 5.39 15 21 H 0.12 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.10 1.03 8.14 -2.38 -0.02 1.01 15 23 H 0.12 0.33 8.14 -2.39 -0.02 0.31 15 24 H 0.44 5.11 8.81 -92.71 -0.82 4.30 15 25 H 0.17 3.68 8.06 -2.91 -0.02 3.66 15 26 H 0.14 4.99 8.06 -2.91 -0.02 4.97 15 27 H 0.31 14.25 9.06 -89.70 -0.81 13.44 15 28 H 0.32 15.92 8.31 -89.70 -0.75 15.17 15 29 H 0.26 14.78 8.31 -92.70 -0.77 14.01 15 Total: -1.00 -75.27 270.82 0.22 -75.05 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -1.17 Total: 24.88 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 3.39 Total: -22.00 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -2.87 Total: -110.96 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.11 Total: 5.39 kcal Total: -75.27 0.22 -75.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238085729.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds