Wall clock time and date at job start Mon Mar 30 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21305 * 119.99853 * 2 1 4 4 N 1.34778 * 119.99836 * 179.97438 * 2 1 3 5 5 C 1.39736 * 119.99526 * 180.02562 * 4 2 1 6 6 C 1.34091 * 125.23469 * 179.97438 * 5 4 2 7 7 C 1.38483 * 114.74557 * 180.02562 * 6 5 4 8 8 C 1.33300 * 114.98495 * 0.02562 * 7 6 5 9 9 C 1.50703 * 125.13791 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46738 * 339.99455 * 9 8 7 11 11 N 1.46898 * 109.46820 * 219.99731 * 9 8 7 12 12 C 1.50700 * 109.47307 * 99.99479 * 9 8 7 13 13 H 1.08000 * 119.99759 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99812 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99999 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99688 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47549 * 90.00169 * 16 14 12 18 18 H 1.48507 * 109.47106 * 210.00433 * 16 14 12 19 19 H 1.48506 * 109.47349 * 329.99725 * 16 14 12 20 20 S 1.75869 * 109.72819 * 359.97438 * 8 7 6 21 21 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47204 * 300.00218 * 1 2 3 23 23 H 1.08999 * 109.47042 * 60.00407 * 1 2 3 24 24 H 0.97000 * 120.00232 * 0.02562 * 4 2 1 25 25 H 1.08001 * 122.62713 * 0.05966 * 6 5 4 26 26 H 1.07994 * 122.50504 * 179.97438 * 7 6 5 27 27 H 1.00900 * 111.00301 * 299.99297 * 11 9 8 28 28 H 1.00903 * 111.00293 * 63.95418 * 11 9 8 29 29 H 0.97001 * 119.99840 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5783 -1.1672 0.0011 6 6 4.3520 -2.2624 0.0021 7 6 5.7136 -2.0102 0.0030 8 6 6.0472 -0.7196 0.0033 9 6 7.4575 -0.1882 0.0037 10 1 8.1378 -0.9639 0.3553 11 7 7.5413 0.9771 0.8941 12 6 7.8410 0.2198 -1.3954 13 1 7.1340 0.1062 -2.2039 14 6 9.0944 0.7382 -1.6432 15 7 9.9550 0.8770 -0.6585 16 14 9.5694 1.2447 -3.3773 17 1 9.2099 2.6692 -3.5930 18 1 11.0328 1.0702 -3.5605 19 1 8.8435 0.3971 -4.3570 20 16 4.5930 0.2695 0.0016 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6959 -2.0073 0.0005 25 1 3.9450 -3.2628 0.0017 26 1 6.4501 -2.8000 0.0043 27 1 6.9194 1.7108 0.5891 28 1 7.3514 0.7162 1.8501 29 1 10.8369 1.2414 -0.8328 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238086717.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:58 Heat of formation + Delta-G solvation = -2.242482 kcal Electronic energy + Delta-G solvation = -14572.706040 eV Core-core repulsion = 12008.474223 eV Total energy + Delta-G solvation = -2564.231818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.93506 -37.38744 -35.04851 -33.63858 -31.40190 -30.31492 -27.52864 -25.61432 -23.32484 -21.54008 -20.64446 -19.32710 -17.39410 -16.43456 -16.29892 -15.56497 -15.07623 -14.51708 -14.20743 -13.96595 -13.47373 -13.08311 -12.88739 -12.45687 -12.20219 -12.02110 -11.63642 -11.12322 -10.78910 -10.75971 -10.52190 -10.35312 -9.85160 -9.42433 -9.08350 -8.39424 -7.77155 -7.33975 -7.05336 -5.84561 -3.99359 1.57919 2.03225 2.57035 2.81898 3.14539 3.37686 3.43669 3.46014 3.52770 4.52636 4.60478 4.88101 5.12730 5.40487 5.50566 5.71855 5.85500 6.08810 6.30866 6.49104 6.63515 7.05522 7.11794 7.29185 7.48297 7.94415 7.98690 8.19031 8.63668 9.00999 9.16277 9.68919 11.19613 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.006385 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.762561 B = 4384.266958 C = 4562.635670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.493 3.507 3 O -0.515 6.515 4 N -0.633 5.633 5 C -0.015 4.015 6 C -0.168 4.168 7 C -0.161 4.161 8 C -0.184 4.184 9 C 0.284 3.716 10 H 0.056 0.944 11 N -0.808 5.808 12 C -0.530 4.530 13 H 0.055 0.945 14 C 0.084 3.916 15 N -0.847 5.847 16 Si 0.886 3.114 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 S 0.197 5.803 21 H 0.077 0.923 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.411 0.589 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.317 0.683 28 H 0.300 0.700 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 -5.441 2.499 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.281 3.719 3 O -0.391 6.391 4 N -0.278 5.278 5 C -0.227 4.227 6 C -0.203 4.203 7 C -0.189 4.189 8 C -0.305 4.305 9 C 0.172 3.828 10 H 0.073 0.927 11 N -0.334 5.334 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.123 4.123 15 N -0.482 5.482 16 Si 0.713 3.287 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 S 0.457 5.543 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.247 0.753 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.053 -3.020 2.339 16.501 hybrid contribution -0.801 -2.112 -0.853 2.415 sum -16.854 -5.132 1.485 17.680 Atomic orbital electron populations 1.21782 0.90389 1.04382 1.05702 1.21130 0.91151 0.83218 0.76439 1.90725 1.69539 1.30736 1.48099 1.42940 1.03355 1.09678 1.71872 1.22075 0.86500 1.00139 1.13944 1.19741 0.93451 0.97010 1.10123 1.19630 0.94404 0.96661 1.08251 1.27270 1.03377 0.97408 1.02463 1.17853 0.81832 0.89388 0.93740 0.92673 1.59184 1.60047 1.11239 1.02922 1.20861 0.99177 1.45181 0.91698 0.92692 1.24942 0.96298 0.94844 0.96226 1.70102 1.05600 1.42192 1.30312 0.86726 0.77493 0.79068 0.85407 1.20636 1.21264 1.19982 1.84998 0.92852 1.03821 1.72616 0.90440 0.88343 0.88328 0.75290 0.85645 0.85102 0.87062 0.88939 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.39 36.01 0.37 -0.78 15 2 C 0.49 6.40 7.91 -10.98 -0.09 6.31 15 3 O -0.52 -9.17 14.63 5.54 0.08 -9.09 15 4 N -0.63 -8.01 5.43 -10.75 -0.06 -8.07 15 5 C -0.02 -0.26 7.17 -15.40 -0.11 -0.37 15 6 C -0.17 -2.82 10.20 -40.95 -0.42 -3.23 15 7 C -0.16 -3.17 10.03 -41.22 -0.41 -3.58 15 8 C -0.18 -4.06 5.37 -36.03 -0.19 -4.26 15 9 C 0.28 7.23 3.05 -70.02 -0.21 7.01 15 10 H 0.06 1.52 8.12 -51.93 -0.42 1.10 15 11 N -0.81 -19.75 8.46 -6.65 -0.06 -19.81 15 12 C -0.53 -14.93 8.71 -34.44 -0.30 -15.23 15 13 H 0.05 1.57 7.74 -52.49 -0.41 1.17 15 14 C 0.08 2.38 5.39 -17.82 -0.10 2.28 15 15 N -0.85 -24.99 12.77 55.43 0.71 -24.28 15 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 15 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 20 S 0.20 3.99 19.65 -107.50 -2.11 1.88 15 21 H 0.08 0.32 7.91 -51.93 -0.41 -0.09 15 22 H 0.10 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.10 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.41 3.42 8.65 -40.82 -0.35 3.07 15 25 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.13 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.32 7.61 8.32 -39.29 -0.33 7.28 15 28 H 0.30 6.58 9.06 -39.29 -0.36 6.22 15 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 270.53 15.07 4.08 4.08 Total: -1.00 -33.47 270.53 -6.94 -40.42 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.10 Total: 9.92 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.46 Total: -11.83 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.59 Total: -52.15 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.11 Total: 1.88 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.47 -6.94 -40.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238086717.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.173 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds