Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21305 * 119.99853 * 2 1 4 4 N 1.34778 * 119.99836 * 179.97438 * 2 1 3 5 5 C 1.39736 * 119.99526 * 180.02562 * 4 2 1 6 6 C 1.34091 * 125.23469 * 179.97438 * 5 4 2 7 7 C 1.38483 * 114.74557 * 180.02562 * 6 5 4 8 8 C 1.33300 * 114.98495 * 0.02562 * 7 6 5 9 9 C 1.50703 * 125.13791 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46738 * 339.99455 * 9 8 7 11 11 N 1.46898 * 109.46820 * 219.99731 * 9 8 7 12 12 C 1.50700 * 109.47307 * 99.99479 * 9 8 7 13 13 H 1.08000 * 119.99759 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99812 * 180.02562 * 12 9 8 15 15 N 1.31512 * 119.99999 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 119.99688 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47549 * 90.00169 * 16 14 12 18 18 H 1.48507 * 109.47106 * 210.00433 * 16 14 12 19 19 H 1.48506 * 109.47349 * 329.99725 * 16 14 12 20 20 S 1.75869 * 109.72819 * 359.97438 * 8 7 6 21 21 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47204 * 300.00218 * 1 2 3 23 23 H 1.08999 * 109.47042 * 60.00407 * 1 2 3 24 24 H 0.97000 * 120.00232 * 0.02562 * 4 2 1 25 25 H 1.08001 * 122.62713 * 0.05966 * 6 5 4 26 26 H 1.07994 * 122.50504 * 179.97438 * 7 6 5 27 27 H 1.00900 * 111.00301 * 299.99297 * 11 9 8 28 28 H 1.00903 * 111.00293 * 63.95418 * 11 9 8 29 29 H 0.97001 * 119.99840 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5783 -1.1672 0.0011 6 6 4.3520 -2.2624 0.0021 7 6 5.7136 -2.0102 0.0030 8 6 6.0472 -0.7196 0.0033 9 6 7.4575 -0.1882 0.0037 10 1 8.1378 -0.9639 0.3553 11 7 7.5413 0.9771 0.8941 12 6 7.8410 0.2198 -1.3954 13 1 7.1340 0.1062 -2.2039 14 6 9.0944 0.7382 -1.6432 15 7 9.9550 0.8770 -0.6585 16 14 9.5694 1.2447 -3.3773 17 1 9.2099 2.6692 -3.5930 18 1 11.0328 1.0702 -3.5605 19 1 8.8435 0.3971 -4.3570 20 16 4.5930 0.2695 0.0016 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6959 -2.0073 0.0005 25 1 3.9450 -3.2628 0.0017 26 1 6.4501 -2.8000 0.0043 27 1 6.9194 1.7108 0.5891 28 1 7.3514 0.7162 1.8501 29 1 10.8369 1.2414 -0.8328 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238086717.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -28.135019 kcal Electronic energy + Delta-G solvation = -14573.828825 eV Core-core repulsion = 12008.474223 eV Total energy + Delta-G solvation = -2565.354602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.04538 -38.86459 -36.66600 -35.18826 -33.42964 -31.21143 -29.06895 -27.54166 -24.87667 -23.08792 -22.00820 -20.69427 -18.69985 -18.44869 -17.59326 -16.76583 -16.58909 -16.32469 -15.89588 -15.47130 -14.86208 -14.49506 -14.10063 -13.82359 -13.52368 -13.27944 -13.07915 -12.86916 -12.69998 -12.59410 -12.02698 -11.84686 -11.67220 -11.09798 -10.80238 -10.55160 -9.33554 -9.07116 -8.67692 -7.99491 -6.22030 0.16789 0.59056 1.32093 1.40996 1.41975 1.45340 1.52661 2.06364 2.09353 2.46699 3.23246 3.82610 4.34942 4.38005 4.45421 4.52639 4.63471 4.67647 4.98769 5.09858 5.19243 5.30428 5.62605 5.71698 5.75588 6.11495 6.30662 6.59124 7.00231 7.00852 7.18319 7.49795 9.03174 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.006385 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.762561 B = 4384.266958 C = 4562.635670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.486 3.514 3 O -0.568 6.568 4 N -0.620 5.620 5 C 0.005 3.995 6 C -0.168 4.168 7 C -0.151 4.151 8 C -0.226 4.226 9 C 0.290 3.710 10 H 0.023 0.977 11 N -0.817 5.817 12 C -0.544 4.544 13 H 0.043 0.957 14 C 0.036 3.964 15 N -0.879 5.879 16 Si 0.949 3.051 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.271 1.271 20 S 0.159 5.841 21 H 0.115 0.885 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.435 0.565 25 H 0.170 0.830 26 H 0.135 0.865 27 H 0.318 0.682 28 H 0.312 0.688 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.740 -6.729 1.951 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.276 3.724 3 O -0.447 6.447 4 N -0.268 5.268 5 C -0.208 4.208 6 C -0.202 4.202 7 C -0.181 4.181 8 C -0.346 4.346 9 C 0.178 3.822 10 H 0.041 0.959 11 N -0.343 5.343 12 C -0.583 4.583 13 H 0.061 0.939 14 C -0.168 4.168 15 N -0.515 5.515 16 Si 0.774 3.226 17 H -0.204 1.204 18 H -0.204 1.204 19 H -0.196 1.196 20 S 0.419 5.581 21 H 0.134 0.866 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.277 0.723 25 H 0.188 0.812 26 H 0.153 0.847 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.730 -4.356 1.790 19.313 hybrid contribution -0.133 -1.765 -0.639 1.882 sum -18.862 -6.121 1.152 19.864 Atomic orbital electron populations 1.21855 0.85170 1.07305 1.06641 1.22368 0.93475 0.82149 0.74398 1.90709 1.70971 1.32707 1.50322 1.43063 1.01370 1.11269 1.71109 1.22107 0.88655 0.98235 1.11834 1.19952 0.91828 0.98889 1.09540 1.19942 0.96313 0.95820 1.06024 1.26742 1.02372 0.98709 1.06767 1.17422 0.83638 0.88690 0.92452 0.95911 1.59034 1.60379 1.11276 1.03626 1.21122 0.99157 1.45125 0.92882 0.93885 1.25679 0.96286 0.94894 0.99962 1.70218 1.05881 1.43133 1.32238 0.85734 0.77397 0.78565 0.80893 1.20399 1.20439 1.19578 1.85120 0.93344 1.05912 1.73726 0.86594 0.87155 0.87360 0.72337 0.81237 0.84686 0.87003 0.87637 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.39 71.24 0.74 -0.75 15 2 C 0.49 11.31 7.91 87.66 0.69 12.00 15 3 O -0.57 -19.76 14.63 -3.11 -0.05 -19.81 15 4 N -0.62 -13.57 5.43 -306.30 -1.66 -15.23 15 5 C 0.00 0.15 7.17 82.49 0.59 0.74 15 6 C -0.17 -5.18 10.20 21.38 0.22 -4.96 15 7 C -0.15 -5.86 10.03 21.21 0.21 -5.65 15 8 C -0.23 -10.15 5.37 24.57 0.13 -10.02 15 9 C 0.29 15.34 3.05 43.42 0.13 15.47 15 10 H 0.02 1.34 8.12 -2.39 -0.02 1.32 15 11 N -0.82 -41.47 8.46 -174.96 -1.48 -42.95 15 12 C -0.54 -31.54 8.71 25.60 0.22 -31.32 15 13 H 0.04 2.53 7.74 -2.91 -0.02 2.51 15 14 C 0.04 2.06 5.39 84.66 0.46 2.52 15 15 N -0.88 -53.03 12.77 21.45 0.27 -52.75 15 16 Si 0.95 45.48 29.54 68.60 2.03 47.51 15 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 15 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 19 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 20 S 0.16 6.52 19.65 -56.49 -1.11 5.41 15 21 H 0.12 0.27 7.91 -2.39 -0.02 0.25 15 22 H 0.11 0.93 8.14 -2.39 -0.02 0.91 15 23 H 0.11 0.96 8.14 -2.39 -0.02 0.94 15 24 H 0.44 5.13 8.65 -92.71 -0.80 4.33 15 25 H 0.17 3.69 8.06 -2.91 -0.02 3.67 15 26 H 0.14 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.32 15.90 8.32 -89.69 -0.75 15.16 15 28 H 0.31 14.25 9.06 -89.69 -0.81 13.43 15 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 Total: -1.00 -75.23 270.53 0.24 -74.99 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: -1.16 Total: 24.79 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.40 Total: -21.96 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -2.87 Total: -110.93 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.11 Total: 5.41 kcal Total: -75.23 0.24 -74.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238086717.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.854 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds