Wall clock time and date at job start Mon Mar 30 2020 04:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.78600 * 2 1 4 4 C 1.53619 * 109.84049 * 120.81619 * 2 1 3 5 5 N 1.46912 * 109.15732 * 167.53771 * 4 2 1 6 6 C 1.46986 * 111.76200 * 288.26334 * 5 4 2 7 7 C 1.52046 * 108.48751 * 53.04568 * 6 5 4 8 8 C 1.38846 * 125.43366 * 162.38253 * 7 6 5 9 9 O 1.35773 * 121.37537 * 0.08773 * 8 7 6 10 10 C 1.34814 * 117.00248 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99807 * 0.02562 * 10 9 8 12 12 C 1.38637 * 120.00085 * 179.97438 * 10 9 8 13 13 N 1.31565 * 120.00255 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99880 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46984 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47021 * 120.00212 * 14 12 10 17 17 H 1.48496 * 109.47069 * 240.00148 * 14 12 10 18 18 N 1.30411 * 117.25467 * 180.08658 * 8 7 6 19 19 S 1.69701 * 107.16945 * 359.97438 * 18 8 7 20 20 C 1.35876 * 121.29125 * 342.38450 * 7 6 5 21 21 H 1.09003 * 109.47429 * 180.80134 * 1 2 3 22 22 H 1.09004 * 109.47487 * 300.80360 * 1 2 3 23 23 H 1.08995 * 109.47445 * 60.79797 * 1 2 3 24 24 H 1.08990 * 109.53042 * 287.46401 * 4 2 1 25 25 H 1.09008 * 109.52188 * 47.59922 * 4 2 1 26 26 H 1.00896 * 111.00433 * 163.74672 * 5 4 2 27 27 H 1.09005 * 109.63376 * 293.34806 * 6 5 4 28 28 H 1.09000 * 109.64041 * 172.74990 * 6 5 4 29 29 H 0.96995 * 120.00371 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0514 -0.7403 1.2410 5 7 3.4896 -0.9942 1.0821 6 6 3.7518 -2.0315 0.0743 7 6 3.0380 -1.6458 -1.2116 8 6 3.3104 -2.1648 -2.4703 9 8 4.2776 -3.0995 -2.6554 10 6 4.4675 -3.5428 -3.9143 11 1 3.8631 -3.1541 -4.7206 12 6 5.4392 -4.4969 -4.1741 13 7 6.1758 -4.9700 -3.1920 14 14 5.7018 -5.1117 -5.9184 15 1 4.7523 -4.4277 -6.8325 16 1 7.0945 -4.8184 -6.3422 17 1 5.4678 -6.5773 -5.9671 18 7 2.5989 -1.7174 -3.4675 19 16 1.5116 -0.5779 -2.8357 20 6 2.0392 -0.7245 -1.2153 21 1 -0.3634 -1.0276 0.0144 22 1 -0.3634 0.5263 0.8827 23 1 -0.3634 0.5014 -0.8970 24 1 1.8851 -0.1279 2.1272 25 1 1.5233 -1.6878 1.3485 26 1 3.9145 -1.2327 1.9655 27 1 3.3744 -2.9906 0.4291 28 1 4.8240 -2.1017 -0.1089 29 1 6.8554 -5.6378 -3.3736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238477793.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:08 Heat of formation + Delta-G solvation = -15.786713 kcal Electronic energy + Delta-G solvation = -15030.725534 eV Core-core repulsion = 12465.906395 eV Total energy + Delta-G solvation = -2564.819139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15418 -39.23197 -36.57217 -34.35242 -34.09511 -31.54380 -27.97223 -27.47232 -25.15545 -24.21423 -22.27119 -20.24658 -19.50395 -18.73006 -17.79948 -16.60994 -16.42065 -16.06539 -15.95407 -15.68379 -15.06183 -14.86778 -14.08517 -13.83807 -13.61383 -13.36939 -12.89787 -12.79281 -12.63792 -12.37366 -12.17647 -12.06597 -11.96847 -11.50354 -11.27875 -10.83070 -10.07959 -9.55732 -9.01983 -8.54438 -6.23667 -0.10125 0.70599 1.07308 1.32041 1.33125 1.50583 1.68960 2.14932 2.94858 3.07554 3.16529 3.79168 3.85027 3.97094 4.22806 4.37600 4.45960 4.60625 4.70187 4.75932 4.82180 5.00830 5.11192 5.17821 5.24809 5.34623 5.63162 5.89366 6.05299 6.50233 6.90123 7.53138 8.67257 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.007300 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.113037 B = 3834.624568 C = 4481.699079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.014 4.014 3 H 0.111 0.889 4 C 0.065 3.935 5 N -0.691 5.691 6 C 0.150 3.850 7 C -0.205 4.205 8 C 0.285 3.715 9 O -0.200 6.200 10 C -0.404 4.404 11 H 0.089 0.911 12 C -0.013 4.013 13 N -0.911 5.911 14 Si 1.020 2.980 15 H -0.264 1.264 16 H -0.262 1.262 17 H -0.261 1.261 18 N -0.583 5.583 19 S 0.244 5.756 20 C -0.135 4.135 21 H 0.052 0.948 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.035 0.965 26 H 0.364 0.636 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 9.020 9.188 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 H 0.129 0.871 4 C -0.066 4.066 5 N -0.324 5.324 6 C 0.018 3.982 7 C -0.224 4.224 8 C 0.075 3.925 9 O -0.097 6.097 10 C -0.482 4.482 11 H 0.107 0.893 12 C -0.212 4.212 13 N -0.550 5.550 14 Si 0.839 3.161 15 H -0.188 1.188 16 H -0.186 1.186 17 H -0.186 1.186 18 N -0.431 5.431 19 S 0.394 5.606 20 C -0.263 4.263 21 H 0.071 0.929 22 H 0.118 0.882 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.054 0.946 26 H 0.184 0.816 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.299 9.720 7.144 15.861 hybrid contribution 1.225 -1.987 0.754 2.453 sum -9.074 7.733 7.898 14.301 Atomic orbital electron populations 1.21861 0.91179 1.02745 1.04142 1.20107 0.96949 0.98896 0.87543 0.87112 1.22215 0.86875 0.99577 0.97889 1.59986 1.14282 1.45798 1.12345 1.20273 0.98484 0.92239 0.87225 1.19773 1.03932 1.04338 0.94343 1.20871 0.90020 0.91003 0.90569 1.84116 1.45775 1.47921 1.31867 1.21625 1.20744 1.23250 0.82557 0.89288 1.26515 0.94286 0.95519 1.04912 1.70152 1.21678 1.29157 1.33997 0.84530 0.78939 0.78426 0.74230 1.18779 1.18647 1.18594 1.76716 1.17946 1.21784 1.26635 1.82825 1.39995 1.42421 0.95316 1.25608 0.98284 0.99394 1.03054 0.92923 0.88184 0.91766 0.86024 0.94635 0.81553 0.94145 0.91256 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.01 71.98 0.65 -1.78 15 2 C -0.01 -0.32 3.28 -11.43 -0.04 -0.36 15 3 H 0.11 2.32 8.14 -2.39 -0.02 2.31 15 4 C 0.06 1.35 5.92 86.51 0.51 1.86 15 5 N -0.69 -18.41 6.75 -514.22 -3.47 -21.89 15 6 C 0.15 5.58 6.69 85.97 0.58 6.15 15 7 C -0.21 -8.88 5.89 -19.84 -0.12 -8.99 15 8 C 0.29 15.30 7.37 85.05 0.63 15.92 15 9 O -0.20 -12.50 9.58 -22.84 -0.22 -12.72 15 10 C -0.40 -25.26 9.66 67.92 0.66 -24.60 15 11 H 0.09 5.57 6.81 -2.91 -0.02 5.55 15 12 C -0.01 -0.79 5.49 84.83 0.47 -0.32 15 13 N -0.91 -55.99 13.67 21.61 0.30 -55.70 15 14 Si 1.02 45.32 29.55 68.60 2.03 47.35 15 15 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 16 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 17 H -0.26 -10.87 7.11 99.48 0.71 -10.17 15 18 N -0.58 -30.16 10.55 -175.58 -1.85 -32.02 15 19 S 0.24 9.17 23.18 -56.49 -1.31 7.86 15 20 C -0.13 -4.70 5.78 25.04 0.14 -4.56 15 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 22 H 0.10 1.06 8.14 -2.38 -0.02 1.05 15 23 H 0.06 1.11 7.87 -2.39 -0.02 1.09 15 24 H 0.12 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.04 0.78 8.03 -2.38 -0.02 0.76 15 26 H 0.36 7.49 8.90 -89.70 -0.80 6.69 15 27 H 0.04 1.50 8.14 -2.38 -0.02 1.48 15 28 H 0.07 2.90 8.14 -2.39 -0.02 2.88 15 29 H 0.28 15.39 8.31 -92.71 -0.77 14.62 15 Total: -1.00 -75.31 262.49 -0.68 -75.99 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.38 Total: 7.80 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 3.47 Total: -16.68 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.03 Total: -109.60 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.22 Total: -12.72 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 9.17 SS G_CDS: -1.31 Total: 7.86 kcal Total: -75.31 -0.68 -75.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238477793.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.205 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds