Wall clock time and date at job start Mon Mar 30 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35026 * 120.44227 * 2 1 4 4 N 1.36837 * 119.68271 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.68891 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47299 * 270.02107 * 5 4 3 7 7 H 1.09002 * 109.47394 * 305.00164 * 6 5 4 8 8 O 1.42902 * 109.46916 * 64.99787 * 6 5 4 9 9 C 1.50698 * 109.47320 * 184.99800 * 6 5 4 10 10 H 1.08000 * 120.00204 * 0.02562 * 9 6 5 11 11 C 1.37881 * 120.00091 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99819 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00104 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47047 * 90.00278 * 13 11 9 15 15 H 1.48496 * 109.47461 * 210.00589 * 13 11 9 16 16 H 1.48500 * 109.47168 * 330.00541 * 13 11 9 17 17 C 1.34543 * 120.62215 * 359.97438 * 4 3 2 18 18 O 1.21581 * 119.53270 * 180.02562 * 17 4 3 19 19 N 1.34601 * 120.92875 * 0.02562 * 17 4 3 20 20 H 0.97001 * 119.86344 * 179.97438 * 19 17 4 21 21 C 1.34835 * 120.26160 * 0.25745 * 19 17 4 22 22 O 1.21784 * 120.30240 * 179.70577 * 21 19 17 23 23 H 1.09003 * 109.46686 * 89.99793 * 1 2 3 24 24 H 1.08995 * 109.47285 * 210.00202 * 1 2 3 25 25 H 1.09004 * 109.47135 * 330.00238 * 1 2 3 26 26 H 1.08001 * 120.15771 * 0.03971 * 3 2 1 27 27 H 1.08998 * 109.47153 * 30.01998 * 5 4 3 28 28 H 1.08999 * 109.46942 * 150.01836 * 5 4 3 29 29 H 0.96704 * 114.00100 * 60.00525 * 8 6 5 30 30 H 0.97007 * 119.99973 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1641 0.0000 4 7 3.5594 1.1460 -0.0005 5 6 4.3018 2.4089 -0.0011 6 6 4.5592 2.8486 -1.4438 7 1 5.0643 2.0473 -1.9832 8 8 3.3145 3.1414 -2.0818 9 6 5.4270 4.0806 -1.4462 10 1 5.7619 4.5072 -0.5122 11 6 5.7945 4.6627 -2.6409 12 7 5.3872 4.1430 -3.7782 13 14 6.8708 6.1894 -2.6440 14 1 8.2997 5.7876 -2.6860 15 1 6.5538 7.0162 -3.8361 16 1 6.6144 6.9783 -1.4122 17 6 4.2293 -0.0208 -0.0005 18 8 5.4451 -0.0138 -0.0005 19 7 3.5725 -1.1957 -0.0005 20 1 4.0710 -2.0278 -0.0009 21 6 2.2244 -1.2205 -0.0058 22 8 1.6293 -2.2830 -0.0112 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6610 2.1050 0.0006 27 1 3.7190 3.1732 0.5131 28 1 5.2535 2.2711 0.5121 29 1 2.8098 3.8468 -1.6543 30 1 5.6454 4.5527 -4.6188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238492654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:42 Heat of formation + Delta-G solvation = -97.857876 kcal Electronic energy + Delta-G solvation = -17360.802224 eV Core-core repulsion = 14349.671341 eV Total energy + Delta-G solvation = -3011.130883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -41.96994 -38.85001 -37.15508 -35.77490 -34.31889 -32.92789 -32.30641 -29.09073 -26.61345 -25.39018 -24.50810 -22.65957 -20.96330 -18.99560 -18.19964 -17.19039 -16.83107 -16.49261 -15.30938 -14.78747 -14.73043 -14.67910 -13.97454 -13.88691 -13.69305 -13.23353 -12.81878 -12.63860 -11.94994 -11.69049 -11.34579 -11.10493 -10.97748 -10.93572 -10.65107 -10.25814 -10.09107 -10.07694 -9.39891 -8.75517 -8.63624 -7.89302 -6.17198 -4.38231 1.22597 2.21366 2.37684 3.20016 3.27483 3.28314 3.39197 3.70234 4.26678 4.60462 4.87112 5.09690 5.29620 5.33449 5.57100 5.79764 5.84429 5.95448 6.01703 6.13295 6.19283 6.34404 6.47355 6.62247 7.35453 7.52188 7.64232 7.70403 7.90699 8.20816 8.63038 9.10365 9.38396 10.87082 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.006378 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.631653 B = 4389.234123 C = 4708.932403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.299 4.299 3 C 0.205 3.795 4 N -0.517 5.517 5 C 0.077 3.923 6 C 0.218 3.782 7 H 0.065 0.935 8 O -0.562 6.562 9 C -0.577 4.577 10 H 0.061 0.939 11 C 0.082 3.918 12 N -0.855 5.855 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.689 3.311 18 O -0.536 6.536 19 N -0.661 5.661 20 H 0.425 0.575 21 C 0.558 3.442 22 O -0.534 6.534 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.174 0.826 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.344 0.656 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -3.091 8.166 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.308 4.308 3 C 0.079 3.921 4 N -0.234 5.234 5 C -0.043 4.043 6 C 0.160 3.840 7 H 0.083 0.917 8 O -0.364 6.364 9 C -0.615 4.615 10 H 0.079 0.921 11 C -0.126 4.126 12 N -0.489 5.489 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.391 3.609 18 O -0.409 6.409 19 N -0.329 5.329 20 H 0.266 0.734 21 C 0.354 3.646 22 O -0.411 6.411 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.191 0.809 27 H 0.106 0.894 28 H 0.119 0.881 29 H 0.188 0.812 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.799 -3.947 7.562 10.908 hybrid contribution 0.799 0.954 0.197 1.260 sum -6.000 -2.992 7.758 10.254 Atomic orbital electron populations 1.20171 0.87851 1.02497 1.02269 1.20269 0.98516 0.90586 1.21460 1.22218 0.82587 1.00222 0.87102 1.45129 1.05972 1.08106 1.64168 1.23292 0.97068 0.79557 1.04415 1.19769 0.83263 0.96395 0.84596 0.91694 1.86656 1.34259 1.57006 1.58483 1.21409 1.34355 1.12544 0.93163 0.92086 1.25028 0.94872 0.97239 0.95425 1.70073 1.42213 1.39245 0.97405 0.86565 0.80830 0.82597 0.77763 1.20378 1.21031 1.19666 1.15966 0.85738 0.80479 0.78679 1.91064 1.10598 1.85416 1.53829 1.44639 1.09337 1.09797 1.69091 0.73362 1.17148 0.80754 0.90905 0.75769 1.90852 1.67614 1.32636 1.49979 0.91686 0.91222 0.91668 0.80933 0.89358 0.88145 0.81180 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.82 36.01 0.35 -0.42 16 2 C -0.30 -4.10 5.89 -104.49 -0.62 -4.72 16 3 C 0.21 2.71 9.51 -16.46 -0.16 2.56 16 4 N -0.52 -8.38 2.59 -121.53 -0.31 -8.70 16 5 C 0.08 1.35 4.96 -4.04 -0.02 1.33 16 6 C 0.22 5.00 3.07 -27.89 -0.09 4.92 16 7 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 8 O -0.56 -12.53 12.19 -35.23 -0.43 -12.96 16 9 C -0.58 -14.54 8.76 -34.44 -0.30 -14.84 16 10 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 11 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 12 N -0.85 -24.21 12.84 55.43 0.71 -23.50 16 13 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 C 0.69 12.23 8.38 -87.28 -0.73 11.50 16 18 O -0.54 -11.14 16.66 5.29 0.09 -11.05 16 19 N -0.66 -10.27 5.23 -18.50 -0.10 -10.37 16 20 H 0.43 5.81 8.89 -40.82 -0.36 5.44 16 21 C 0.56 8.91 7.72 -14.96 -0.12 8.79 16 22 O -0.53 -9.63 17.12 5.11 0.09 -9.54 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.80 7.66 -51.93 -0.40 0.41 16 25 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 28 H 0.10 1.86 7.37 -51.93 -0.38 1.48 16 29 H 0.34 6.34 9.04 45.56 0.41 6.75 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 270.47 15.07 4.08 4.08 Total: -1.00 -32.34 270.47 -5.05 -37.38 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -2.38 Total: 8.39 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.77 Total: 11.18 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.30 Total: -42.56 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.25 Total: -33.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.34 -5.05 -37.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.474 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds