Wall clock time and date at job start Mon Mar 30 2020 04:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35026 * 120.44227 * 2 1 4 4 N 1.36837 * 119.68271 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.68891 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47299 * 270.02107 * 5 4 3 7 7 H 1.09002 * 109.47394 * 305.00164 * 6 5 4 8 8 O 1.42902 * 109.46916 * 64.99787 * 6 5 4 9 9 C 1.50698 * 109.47320 * 184.99800 * 6 5 4 10 10 H 1.08000 * 120.00204 * 0.02562 * 9 6 5 11 11 C 1.37881 * 120.00091 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99819 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00104 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47047 * 90.00278 * 13 11 9 15 15 H 1.48496 * 109.47461 * 210.00589 * 13 11 9 16 16 H 1.48500 * 109.47168 * 330.00541 * 13 11 9 17 17 C 1.34543 * 120.62215 * 359.97438 * 4 3 2 18 18 O 1.21581 * 119.53270 * 180.02562 * 17 4 3 19 19 N 1.34601 * 120.92875 * 0.02562 * 17 4 3 20 20 H 0.97001 * 119.86344 * 179.97438 * 19 17 4 21 21 C 1.34835 * 120.26160 * 0.25745 * 19 17 4 22 22 O 1.21784 * 120.30240 * 179.70577 * 21 19 17 23 23 H 1.09003 * 109.46686 * 89.99793 * 1 2 3 24 24 H 1.08995 * 109.47285 * 210.00202 * 1 2 3 25 25 H 1.09004 * 109.47135 * 330.00238 * 1 2 3 26 26 H 1.08001 * 120.15771 * 0.03971 * 3 2 1 27 27 H 1.08998 * 109.47153 * 30.01998 * 5 4 3 28 28 H 1.08999 * 109.46942 * 150.01836 * 5 4 3 29 29 H 0.96704 * 114.00100 * 60.00525 * 8 6 5 30 30 H 0.97007 * 119.99973 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1641 0.0000 4 7 3.5594 1.1460 -0.0005 5 6 4.3018 2.4089 -0.0011 6 6 4.5592 2.8486 -1.4438 7 1 5.0643 2.0473 -1.9832 8 8 3.3145 3.1414 -2.0818 9 6 5.4270 4.0806 -1.4462 10 1 5.7619 4.5072 -0.5122 11 6 5.7945 4.6627 -2.6409 12 7 5.3872 4.1430 -3.7782 13 14 6.8708 6.1894 -2.6440 14 1 8.2997 5.7876 -2.6860 15 1 6.5538 7.0162 -3.8361 16 1 6.6144 6.9783 -1.4122 17 6 4.2293 -0.0208 -0.0005 18 8 5.4451 -0.0138 -0.0005 19 7 3.5725 -1.1957 -0.0005 20 1 4.0710 -2.0278 -0.0009 21 6 2.2244 -1.2205 -0.0058 22 8 1.6293 -2.2830 -0.0112 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6610 2.1050 0.0006 27 1 3.7190 3.1732 0.5131 28 1 5.2535 2.2711 0.5121 29 1 2.8098 3.8468 -1.6543 30 1 5.6454 4.5527 -4.6188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238492654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:40 Heat of formation + Delta-G solvation = -123.800931 kcal Electronic energy + Delta-G solvation = -17361.927200 eV Core-core repulsion = 14349.671341 eV Total energy + Delta-G solvation = -3012.255858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.27670 -40.21050 -38.62030 -37.35215 -35.71399 -34.27676 -34.10057 -30.68032 -27.81273 -27.03588 -25.71797 -24.18715 -22.51841 -20.26717 -19.61760 -18.89203 -18.11650 -17.86618 -16.82864 -16.66978 -16.19233 -16.08138 -15.53437 -15.39501 -14.89810 -14.79341 -13.92687 -13.74835 -13.35980 -13.01904 -12.89235 -12.77968 -12.61055 -12.48757 -12.09872 -11.99500 -11.47547 -11.42237 -11.12976 -10.72411 -10.35224 -9.19549 -8.15256 -6.41620 0.08460 0.85370 1.07574 1.44073 1.46210 1.55437 2.13806 2.40400 2.44926 3.12824 3.52551 3.76314 4.05172 4.24929 4.28858 4.35914 4.44135 4.85777 4.90434 4.98462 5.06905 5.20496 5.32512 5.46014 5.58716 5.67370 5.98979 6.17013 6.39299 6.70326 6.89918 7.33970 7.56497 8.89196 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.006378 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.631653 B = 4389.234123 C = 4708.932403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.299 4.299 3 C 0.208 3.792 4 N -0.517 5.517 5 C 0.094 3.906 6 C 0.222 3.778 7 H 0.007 0.993 8 O -0.573 6.573 9 C -0.582 4.582 10 H 0.074 0.926 11 C 0.026 3.974 12 N -0.901 5.901 13 Si 0.961 3.039 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.254 1.254 17 C 0.685 3.315 18 O -0.576 6.576 19 N -0.654 5.654 20 H 0.430 0.570 21 C 0.549 3.451 22 O -0.559 6.559 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.218 0.782 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.365 0.635 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -1.414 9.535 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.308 4.308 3 C 0.083 3.917 4 N -0.234 5.234 5 C -0.026 4.026 6 C 0.164 3.836 7 H 0.025 0.975 8 O -0.378 6.378 9 C -0.620 4.620 10 H 0.092 0.908 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.786 3.214 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.178 1.178 17 C 0.387 3.613 18 O -0.452 6.452 19 N -0.320 5.320 20 H 0.272 0.728 21 C 0.347 3.653 22 O -0.438 6.438 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.234 0.766 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.211 0.789 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.149 -2.266 8.960 12.322 hybrid contribution 1.159 0.359 -0.226 1.234 sum -6.990 -1.906 8.735 11.349 Atomic orbital electron populations 1.20267 0.85613 1.03892 1.02803 1.20598 0.99925 0.89587 1.20651 1.22831 0.80987 1.01898 0.85950 1.45047 1.07206 1.07074 1.64063 1.22941 0.98025 0.80969 1.00713 1.19414 0.83161 0.94057 0.86975 0.97505 1.86577 1.33845 1.58031 1.59378 1.21903 1.33875 1.12812 0.93428 0.90808 1.25892 0.96238 1.00287 0.95229 1.70220 1.44423 1.41087 0.98000 0.85534 0.78524 0.79156 0.78203 1.20841 1.21250 1.17785 1.16163 0.85426 0.81286 0.78441 1.91035 1.12331 1.86015 1.55791 1.44601 1.09539 1.09591 1.68309 0.72777 1.17650 0.80608 0.91625 0.75376 1.90842 1.67840 1.33697 1.51424 0.91497 0.92084 0.88067 0.76570 0.84671 0.89339 0.78875 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.82 71.24 0.70 -0.58 16 2 C -0.30 -7.45 5.89 -19.78 -0.12 -7.57 16 3 C 0.21 4.79 9.51 83.17 0.79 5.58 16 4 N -0.52 -15.85 2.59 -656.82 -1.70 -17.55 16 5 C 0.09 3.10 4.96 86.38 0.43 3.52 16 6 C 0.22 10.09 3.07 29.85 0.09 10.18 16 7 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 8 O -0.57 -24.70 12.19 -148.98 -1.82 -26.52 16 9 C -0.58 -28.75 8.76 25.60 0.22 -28.53 16 10 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 11 C 0.03 1.38 5.40 84.66 0.46 1.84 16 12 N -0.90 -51.67 12.84 21.45 0.28 -51.39 16 13 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 17 C 0.68 24.20 8.38 179.18 1.50 25.70 16 18 O -0.58 -24.49 16.66 -3.97 -0.07 -24.55 16 19 N -0.65 -20.28 5.23 -448.95 -2.35 -22.63 16 20 H 0.43 12.00 8.89 -92.71 -0.82 11.18 16 21 C 0.55 17.06 7.72 85.05 0.66 17.71 16 22 O -0.56 -19.92 17.12 -4.62 -0.08 -20.00 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 25 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 26 H 0.22 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.14 3.21 8.03 -2.39 -0.02 3.19 16 28 H 0.09 3.17 7.37 -2.39 -0.02 3.15 16 29 H 0.37 12.29 9.04 -74.05 -0.67 11.62 16 30 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -71.70 270.47 0.72 -70.98 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.30 Total: 20.95 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 4.73 Total: 27.87 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -3.77 Total: -91.56 kcal Atomic # 8 Polarization: -69.11 SS G_CDS: -1.96 Total: -71.07 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -71.70 0.72 -70.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.819 kcal (2) G-P(sol) polarization free energy of solvation -71.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds