Wall clock time and date at job start Mon Mar 30 2020 04:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35022 * 120.44014 * 2 1 4 4 N 1.36830 * 119.68188 * 180.22336 * 3 2 1 5 5 C 1.46505 * 119.68938 * 179.78589 * 4 3 2 6 6 C 1.52997 * 109.47212 * 269.72591 * 5 4 3 7 7 H 1.08998 * 109.47533 * 59.99637 * 6 5 4 8 8 O 1.42905 * 109.47264 * 299.99925 * 6 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.34546 * 120.62330 * 359.50939 * 4 3 2 18 18 O 1.21586 * 119.53222 * 180.25402 * 17 4 3 19 19 N 1.34593 * 120.93012 * 0.23193 * 17 4 3 20 20 H 0.96998 * 119.86907 * 180.02562 * 19 17 4 21 21 C 1.34840 * 120.26378 * 359.97438 * 19 17 4 22 22 O 1.21779 * 120.30939 * 180.02562 * 21 19 17 23 23 H 1.09010 * 109.47089 * 180.28311 * 1 2 3 24 24 H 1.08999 * 109.47813 * 300.28217 * 1 2 3 25 25 H 1.09000 * 109.47212 * 60.29129 * 1 2 3 26 26 H 1.07995 * 120.15980 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47068 * 29.72651 * 5 4 3 28 28 H 1.09001 * 109.47372 * 149.72738 * 5 4 3 29 29 H 0.96696 * 114.00036 * 299.99911 * 8 6 5 30 30 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1641 0.0000 4 7 3.5592 1.1460 -0.0046 5 6 4.3016 2.4090 -0.0094 6 6 4.5611 2.8427 -1.4535 7 1 3.6101 2.9782 -1.9687 8 8 5.3261 1.8379 -2.1224 9 6 5.3242 4.1421 -1.4585 10 1 5.5972 4.6116 -0.5249 11 6 5.6748 4.7313 -2.6547 12 7 5.3427 4.1593 -3.7915 13 14 6.6200 6.3424 -2.6609 14 1 6.8690 6.7754 -1.2624 15 1 7.9173 6.1525 -3.3582 16 1 5.8258 7.3796 -3.3667 17 6 4.2292 -0.0208 0.0007 18 8 5.4451 -0.0137 0.0011 19 7 3.5725 -1.1956 0.0061 20 1 4.0711 -2.0277 0.0103 21 6 2.2244 -1.2205 0.0067 22 8 1.6293 -2.2831 0.0120 23 1 -0.3634 -1.0277 0.0051 24 1 -0.3635 0.5182 0.8874 25 1 -0.3633 0.5093 -0.8926 26 1 1.6609 2.1050 -0.0004 27 1 3.7181 3.1754 0.5008 28 1 5.2526 2.2734 0.5057 29 1 6.1869 1.6645 -1.7176 30 1 5.5896 4.5736 -4.6331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238492850.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:50 Heat of formation + Delta-G solvation = -97.770285 kcal Electronic energy + Delta-G solvation = -17410.409745 eV Core-core repulsion = 14399.282661 eV Total energy + Delta-G solvation = -3011.127085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.94046 -38.84047 -37.02635 -35.75460 -34.23851 -32.90220 -32.24089 -29.03823 -26.67770 -25.32835 -24.50226 -22.61737 -20.90193 -18.99069 -18.14225 -17.15910 -16.81187 -16.47722 -15.31062 -14.76469 -14.70680 -14.57830 -13.95076 -13.85504 -13.62170 -13.21717 -12.83756 -12.66788 -11.89483 -11.67099 -11.26438 -11.08623 -10.98421 -10.93928 -10.59826 -10.22961 -10.07418 -10.04340 -9.32415 -8.74123 -8.50727 -7.87739 -6.16211 -4.37197 1.19175 2.25831 2.41405 3.18828 3.27807 3.29802 3.40410 3.72855 4.27225 4.59523 4.86183 5.12082 5.30862 5.34821 5.57457 5.74221 5.90236 5.97073 6.07484 6.13946 6.22087 6.36064 6.53656 6.58424 7.36866 7.51230 7.65990 7.73582 7.92638 8.25428 8.64926 9.26183 9.41828 10.87926 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.042096 B = 0.006346 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.988915 B = 4410.925791 C = 4683.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.296 4.296 3 C 0.192 3.808 4 N -0.516 5.516 5 C 0.074 3.926 6 C 0.219 3.781 7 H 0.059 0.941 8 O -0.560 6.560 9 C -0.577 4.577 10 H 0.061 0.939 11 C 0.082 3.918 12 N -0.855 5.855 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.697 3.303 18 O -0.533 6.533 19 N -0.661 5.661 20 H 0.425 0.575 21 C 0.558 3.442 22 O -0.534 6.534 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.174 0.826 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.354 0.646 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.760 -3.600 8.147 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.305 4.305 3 C 0.066 3.934 4 N -0.233 5.233 5 C -0.046 4.046 6 C 0.160 3.840 7 H 0.077 0.923 8 O -0.363 6.363 9 C -0.616 4.616 10 H 0.079 0.921 11 C -0.126 4.126 12 N -0.489 5.489 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.399 3.601 18 O -0.405 6.405 19 N -0.328 5.328 20 H 0.266 0.734 21 C 0.354 3.646 22 O -0.412 6.412 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.191 0.809 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.199 0.801 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.861 -3.977 7.559 10.955 hybrid contribution 1.222 0.696 0.209 1.422 sum -5.639 -3.280 7.768 10.143 Atomic orbital electron populations 1.20234 0.87900 1.03654 1.01599 1.20276 0.98511 0.90637 1.21102 1.22242 0.82839 1.00400 0.87953 1.45087 1.05700 1.08312 1.64176 1.23332 0.96948 0.79632 1.04692 1.19748 0.93496 0.86799 0.83917 0.92289 1.86531 1.32146 1.59540 1.58070 1.21480 1.39662 1.07340 0.93074 0.92107 1.25023 0.94945 0.97147 0.95458 1.70087 1.43601 1.37924 0.97333 0.86526 0.79801 0.83222 0.78306 1.19578 1.20775 1.20796 1.15822 0.85691 0.80268 0.78318 1.91006 1.10625 1.85303 1.53616 1.44606 1.09225 1.09889 1.69096 0.73383 1.17128 0.80860 0.90877 0.75710 1.90845 1.67638 1.32614 1.50065 0.90645 0.91809 0.91583 0.80875 0.88934 0.88732 0.80105 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.04 36.00 0.36 -0.46 16 2 C -0.30 -4.03 5.89 -104.49 -0.62 -4.64 16 3 C 0.19 2.53 10.06 -16.46 -0.17 2.36 16 4 N -0.52 -8.32 2.57 -121.53 -0.31 -8.63 16 5 C 0.07 1.30 5.03 -4.04 -0.02 1.27 16 6 C 0.22 5.02 3.09 -27.89 -0.09 4.93 16 7 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 8 O -0.56 -14.07 11.52 -45.25 -0.52 -14.59 16 9 C -0.58 -14.50 8.76 -34.44 -0.30 -14.80 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.08 2.15 5.40 -17.82 -0.10 2.06 16 12 N -0.85 -24.17 12.84 55.43 0.71 -23.46 16 13 Si 0.89 20.06 29.54 -169.99 -5.02 15.03 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.70 12.20 7.88 -87.29 -0.69 11.52 16 18 O -0.53 -10.65 15.38 -4.73 -0.07 -10.72 16 19 N -0.66 -10.26 5.23 -18.49 -0.10 -10.35 16 20 H 0.43 5.83 8.88 -40.82 -0.36 5.47 16 21 C 0.56 8.89 7.72 -14.96 -0.12 8.77 16 22 O -0.53 -9.61 16.86 5.12 0.09 -9.52 16 23 H 0.07 0.91 7.17 -51.92 -0.37 0.54 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.09 1.34 8.03 -51.93 -0.42 0.93 16 28 H 0.09 1.72 7.37 -51.93 -0.38 1.33 16 29 H 0.35 8.54 8.39 45.56 0.38 8.92 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -31.73 267.51 -5.31 -37.03 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.38 Total: 10.19 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -1.73 Total: 11.00 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.30 Total: -42.45 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.51 Total: -34.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.73 -5.31 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492850.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.736 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds