Wall clock time and date at job start Mon Mar 30 2020 04:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35022 * 120.44014 * 2 1 4 4 N 1.36830 * 119.68188 * 180.22336 * 3 2 1 5 5 C 1.46505 * 119.68938 * 179.78589 * 4 3 2 6 6 C 1.52997 * 109.47212 * 269.72591 * 5 4 3 7 7 H 1.08998 * 109.47533 * 59.99637 * 6 5 4 8 8 O 1.42905 * 109.47264 * 299.99925 * 6 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.46616 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47104 * 119.99966 * 13 11 9 16 16 H 1.48489 * 109.47200 * 240.00246 * 13 11 9 17 17 C 1.34546 * 120.62330 * 359.50939 * 4 3 2 18 18 O 1.21586 * 119.53222 * 180.25402 * 17 4 3 19 19 N 1.34593 * 120.93012 * 0.23193 * 17 4 3 20 20 H 0.96998 * 119.86907 * 180.02562 * 19 17 4 21 21 C 1.34840 * 120.26378 * 359.97438 * 19 17 4 22 22 O 1.21779 * 120.30939 * 180.02562 * 21 19 17 23 23 H 1.09010 * 109.47089 * 180.28311 * 1 2 3 24 24 H 1.08999 * 109.47813 * 300.28217 * 1 2 3 25 25 H 1.09000 * 109.47212 * 60.29129 * 1 2 3 26 26 H 1.07995 * 120.15980 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47068 * 29.72651 * 5 4 3 28 28 H 1.09001 * 109.47372 * 149.72738 * 5 4 3 29 29 H 0.96696 * 114.00036 * 299.99911 * 8 6 5 30 30 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1641 0.0000 4 7 3.5592 1.1460 -0.0046 5 6 4.3016 2.4090 -0.0094 6 6 4.5611 2.8427 -1.4535 7 1 3.6101 2.9782 -1.9687 8 8 5.3261 1.8379 -2.1224 9 6 5.3242 4.1421 -1.4585 10 1 5.5972 4.6116 -0.5249 11 6 5.6748 4.7313 -2.6547 12 7 5.3427 4.1593 -3.7915 13 14 6.6200 6.3424 -2.6609 14 1 6.8690 6.7754 -1.2624 15 1 7.9173 6.1525 -3.3582 16 1 5.8258 7.3796 -3.3667 17 6 4.2292 -0.0208 0.0007 18 8 5.4451 -0.0137 0.0011 19 7 3.5725 -1.1956 0.0061 20 1 4.0711 -2.0277 0.0103 21 6 2.2244 -1.2205 0.0067 22 8 1.6293 -2.2831 0.0120 23 1 -0.3634 -1.0277 0.0051 24 1 -0.3635 0.5182 0.8874 25 1 -0.3633 0.5093 -0.8926 26 1 1.6609 2.1050 -0.0004 27 1 3.7181 3.1754 0.5008 28 1 5.2526 2.2734 0.5057 29 1 6.1869 1.6645 -1.7176 30 1 5.5896 4.5736 -4.6331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238492850.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:48 Heat of formation + Delta-G solvation = -122.113627 kcal Electronic energy + Delta-G solvation = -17411.465352 eV Core-core repulsion = 14399.282661 eV Total energy + Delta-G solvation = -3012.182691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.22454 -40.18570 -38.44970 -37.39272 -35.64095 -34.25589 -34.05800 -30.66288 -27.85230 -26.97945 -25.69163 -24.12357 -22.46082 -20.24484 -19.56362 -18.86061 -18.07805 -17.84057 -16.82382 -16.65729 -16.19460 -15.95446 -15.54032 -15.30159 -14.90548 -14.73608 -13.95030 -13.78290 -13.34340 -12.94034 -12.86612 -12.77696 -12.57096 -12.54849 -12.04527 -11.96079 -11.41890 -11.39937 -11.07620 -10.71959 -10.28129 -9.17929 -8.14157 -6.40048 0.06560 0.92977 1.13350 1.43200 1.46799 1.56921 2.16704 2.41362 2.48443 3.14203 3.53735 3.76836 4.12117 4.20697 4.29694 4.40154 4.48692 4.83710 4.89609 4.98900 5.10307 5.19680 5.31774 5.47429 5.57536 5.71033 6.01666 6.20870 6.44674 6.70803 6.95550 7.32268 7.48483 8.90394 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.042096 B = 0.006346 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.988915 B = 4410.925791 C = 4683.670499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.296 4.296 3 C 0.194 3.806 4 N -0.517 5.517 5 C 0.092 3.908 6 C 0.213 3.787 7 H 0.039 0.961 8 O -0.579 6.579 9 C -0.580 4.580 10 H 0.073 0.927 11 C 0.027 3.973 12 N -0.900 5.900 13 Si 0.960 3.040 14 H -0.257 1.257 15 H -0.289 1.289 16 H -0.280 1.280 17 C 0.692 3.308 18 O -0.565 6.565 19 N -0.654 5.654 20 H 0.430 0.570 21 C 0.550 3.450 22 O -0.560 6.560 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.216 0.784 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.354 0.646 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 -2.209 9.431 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.305 4.305 3 C 0.069 3.931 4 N -0.234 5.234 5 C -0.028 4.028 6 C 0.155 3.845 7 H 0.056 0.944 8 O -0.383 6.383 9 C -0.618 4.618 10 H 0.091 0.909 11 C -0.176 4.176 12 N -0.537 5.537 13 Si 0.785 3.215 14 H -0.181 1.181 15 H -0.215 1.215 16 H -0.205 1.205 17 C 0.394 3.606 18 O -0.440 6.440 19 N -0.321 5.321 20 H 0.272 0.728 21 C 0.347 3.653 22 O -0.439 6.439 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.199 0.801 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.837 -2.586 8.871 12.116 hybrid contribution 1.477 0.197 -0.180 1.500 sum -6.361 -2.389 8.690 11.031 Atomic orbital electron populations 1.20319 0.85702 1.03356 1.03728 1.20595 0.99903 0.89650 1.20316 1.22820 0.81350 1.02009 0.86887 1.44998 1.06890 1.07325 1.64230 1.22957 0.97968 0.80970 1.00948 1.19745 0.91991 0.86012 0.86768 0.94362 1.86497 1.32425 1.60142 1.59244 1.21940 1.38677 1.07957 0.93275 0.90912 1.25873 0.96032 1.00427 0.95287 1.70226 1.45694 1.39843 0.97933 0.85495 0.77916 0.79301 0.78738 1.18113 1.21510 1.20539 1.16009 0.85483 0.80963 0.78152 1.90983 1.11995 1.85803 1.55217 1.44574 1.09394 1.09747 1.68402 0.72828 1.17611 0.80769 0.91553 0.75320 1.90836 1.67908 1.33679 1.51501 0.92163 0.88933 0.90099 0.76715 0.85020 0.89376 0.80066 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.04 71.23 0.71 -0.66 16 2 C -0.30 -7.35 5.89 -19.78 -0.12 -7.47 16 3 C 0.19 4.48 10.06 83.17 0.84 5.32 16 4 N -0.52 -15.68 2.57 -656.81 -1.69 -17.36 16 5 C 0.09 3.01 5.03 86.38 0.43 3.45 16 6 C 0.21 9.56 3.09 29.85 0.09 9.66 16 7 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 8 O -0.58 -29.36 11.52 -139.40 -1.61 -30.97 16 9 C -0.58 -28.41 8.76 25.60 0.22 -28.18 16 10 H 0.07 3.32 7.74 -2.91 -0.02 3.30 16 11 C 0.03 1.38 5.40 84.65 0.46 1.84 16 12 N -0.90 -51.33 12.84 21.45 0.28 -51.05 16 13 Si 0.96 40.67 29.54 68.60 2.03 42.70 16 14 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 15 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 17 C 0.69 23.76 7.88 179.18 1.41 25.17 16 18 O -0.56 -22.62 15.38 5.59 0.09 -22.54 16 19 N -0.65 -20.06 5.23 -448.94 -2.35 -22.41 16 20 H 0.43 11.89 8.88 -92.71 -0.82 11.07 16 21 C 0.55 16.99 7.72 85.06 0.66 17.64 16 22 O -0.56 -19.90 16.86 -4.60 -0.08 -19.98 16 23 H 0.06 1.34 7.17 -2.38 -0.02 1.32 16 24 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.22 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.13 3.28 8.03 -2.39 -0.02 3.26 16 28 H 0.09 3.05 7.37 -2.39 -0.02 3.03 16 29 H 0.35 17.39 8.39 -74.06 -0.62 16.77 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.60 267.51 1.13 -67.47 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.25 Total: 27.36 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 4.71 Total: 26.78 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -3.76 Total: -90.82 kcal Atomic # 8 Polarization: -71.88 SS G_CDS: -1.60 Total: -73.48 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -68.60 1.13 -67.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238492850.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.644 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds