Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47227 * 89.99625 * 3 2 1 5 5 H 1.48501 * 109.47205 * 210.00198 * 3 2 1 6 6 H 1.48501 * 109.47065 * 329.99929 * 3 2 1 7 7 C 1.37878 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99708 * 178.04299 * 7 2 1 9 9 C 1.50698 * 120.00421 * 358.04592 * 7 2 1 10 10 H 1.08998 * 109.46732 * 324.66769 * 9 7 2 11 11 N 1.46900 * 109.47000 * 84.65954 * 9 7 2 12 12 C 1.50694 * 109.47521 * 204.66358 * 9 7 2 13 13 C 1.38484 * 120.01059 * 286.69633 * 12 9 7 14 14 F 1.35097 * 120.02807 * 359.97438 * 13 12 9 15 15 C 1.38437 * 119.94997 * 179.97438 * 13 12 9 16 16 C 1.38223 * 119.97152 * 0.02562 * 15 13 12 17 17 C 1.38224 * 120.02658 * 359.97155 * 16 15 13 18 18 C 1.38176 * 120.01652 * 106.41500 * 12 9 7 19 19 N 1.48004 * 119.98269 * 0.02562 * 18 12 9 20 20 O 1.21803 * 120.00432 * 321.38683 * 19 18 12 21 21 O 1.21805 * 119.99927 * 141.38616 * 19 18 12 22 22 H 0.97001 * 119.99616 * 174.30967 * 1 2 3 23 23 H 1.00896 * 111.00580 * 292.15195 * 11 9 7 24 24 H 1.00902 * 111.00225 * 56.10939 * 11 9 7 25 25 H 1.07992 * 120.01722 * 180.02562 * 15 13 12 26 26 H 1.08000 * 119.98814 * 179.97438 * 16 15 13 27 27 H 1.08000 * 119.97755 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0841 -1.1943 -0.0314 9 6 1.2518 -2.4988 0.0456 10 1 0.3620 -2.3836 0.6646 11 7 0.8549 -2.8824 -1.3157 12 6 2.1362 -3.5691 0.6314 13 6 3.1809 -4.0892 -0.1142 14 9 3.4075 -3.6378 -1.3672 15 6 3.9928 -5.0720 0.4254 16 6 3.7597 -5.5335 1.7073 17 6 2.7167 -5.0136 2.4506 18 6 1.9087 -4.0279 1.9148 19 7 0.7957 -3.4682 2.7139 20 8 0.5399 -2.2789 2.6528 21 8 0.1355 -4.1969 3.4328 22 1 -0.4849 -0.8359 -0.0833 23 1 0.1618 -2.2476 -1.6828 24 1 1.6572 -2.9336 -1.9255 25 1 4.8081 -5.4781 -0.1549 26 1 4.3928 -6.3005 2.1284 27 1 2.5355 -5.3744 3.4523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = -20.546195 kcal Electronic energy + Delta-G solvation = -17476.364257 eV Core-core repulsion = 14345.125555 eV Total energy + Delta-G solvation = -3131.238702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.69339 -41.65231 -38.92077 -36.07862 -35.14712 -31.97800 -31.29011 -29.96544 -26.35900 -25.48525 -23.44805 -22.14783 -21.03982 -18.84906 -18.13036 -17.51800 -17.07226 -16.14307 -16.11539 -15.67044 -15.33527 -14.55912 -13.85663 -13.57273 -13.16914 -12.91816 -12.50404 -12.26829 -11.96185 -11.73931 -10.96620 -10.86069 -10.80962 -10.50508 -10.21739 -9.76298 -9.63692 -9.30505 -8.76073 -8.51806 -7.52156 -6.53903 -4.32774 0.39013 1.14816 1.58006 1.92386 3.36017 3.38661 3.43898 3.54605 4.28028 4.40200 4.62812 4.78118 4.84772 5.09882 5.20423 5.42921 5.78911 5.84256 5.99708 6.01936 6.24768 6.61802 6.82824 7.05761 7.66107 8.09608 8.19647 8.23963 8.52100 8.60793 9.38760 10.81078 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.011284 C = 0.008928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.767075 B = 2480.869564 C = 3135.342867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.039 3.961 3 Si 1.071 2.929 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.618 4.618 8 H 0.050 0.950 9 C 0.206 3.794 10 H 0.079 0.921 11 N -0.864 5.864 12 C 0.002 3.998 13 C 0.110 3.890 14 F -0.116 7.116 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.076 4.076 18 C -0.022 4.022 19 N 0.022 4.978 20 O -0.101 6.101 21 O -0.191 6.191 22 H 0.273 0.727 23 H 0.338 0.662 24 H 0.330 0.670 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -9.242 1.505 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.170 4.170 3 Si 0.899 3.101 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.658 4.658 8 H 0.069 0.931 9 C 0.097 3.903 10 H 0.096 0.904 11 N -0.395 5.395 12 C -0.001 4.001 13 C 0.090 3.910 14 F -0.094 7.094 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.095 4.095 18 C -0.105 4.105 19 N 0.544 4.456 20 O -0.329 6.329 21 O -0.398 6.398 22 H 0.084 0.916 23 H 0.150 0.850 24 H 0.144 0.856 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.753 -8.642 1.513 11.708 hybrid contribution 0.454 -0.536 -0.262 0.750 sum 8.207 -9.178 1.251 12.376 Atomic orbital electron populations 1.70749 1.06759 1.31231 1.43048 1.25869 0.96328 1.02500 0.92268 0.83515 0.74583 0.74847 0.77179 1.20943 1.21509 1.20768 1.22247 0.94472 0.91081 1.57950 0.93130 1.18598 0.94414 0.88409 0.88861 0.90384 1.59687 1.17576 1.56965 1.05279 1.20313 0.95086 0.93584 0.91087 1.17093 0.95975 0.96560 0.81370 1.91435 1.93335 1.87863 1.36813 1.21436 0.99493 0.96063 0.96552 1.20726 0.97918 1.01207 0.93521 1.20831 0.94000 0.93420 1.01292 1.20547 0.93989 1.02191 0.93766 1.43495 1.01084 1.01098 0.99949 1.94703 1.72486 0.97947 1.67726 1.94460 1.48938 1.58535 1.37833 0.91589 0.84966 0.85577 0.83712 0.83513 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.59 55.43 0.75 -24.73 15 2 C 0.04 1.06 5.46 -17.82 -0.10 0.97 15 3 Si 1.07 24.59 29.90 -169.99 -5.08 19.51 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.62 -16.60 8.39 -34.44 -0.29 -16.89 15 8 H 0.05 1.38 7.81 -52.49 -0.41 0.97 15 9 C 0.21 5.10 1.84 -70.02 -0.13 4.98 15 10 H 0.08 2.13 4.34 -51.93 -0.23 1.91 15 11 N -0.86 -19.90 9.07 -6.65 -0.06 -19.96 15 12 C 0.00 0.05 4.93 -104.56 -0.52 -0.46 15 13 C 0.11 2.05 6.99 -39.42 -0.28 1.77 15 14 F -0.12 -2.23 14.40 2.25 0.03 -2.20 15 15 C -0.12 -1.60 10.03 -39.51 -0.40 -2.00 15 16 C -0.11 -1.41 10.04 -39.59 -0.40 -1.81 15 17 C -0.08 -1.15 9.67 -39.58 -0.38 -1.54 15 18 C -0.02 -0.44 6.46 -79.97 -0.52 -0.95 15 19 N 0.02 0.50 4.12 33.95 0.14 0.64 15 20 O -0.10 -2.53 16.38 -29.46 -0.48 -3.01 15 21 O -0.19 -4.04 18.97 -29.46 -0.56 -4.60 15 22 H 0.27 7.88 6.30 -40.82 -0.26 7.63 15 23 H 0.34 7.95 8.53 -39.29 -0.33 7.61 15 24 H 0.33 7.30 6.34 -39.29 -0.25 7.05 15 25 H 0.15 1.48 8.06 -52.49 -0.42 1.05 15 26 H 0.15 1.17 8.06 -52.49 -0.42 0.74 15 27 H 0.14 1.83 8.02 -52.49 -0.42 1.41 15 LS Contribution 249.00 15.07 3.75 3.75 Total: -1.00 -30.06 249.00 -6.04 -36.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -1.54 Total: 10.42 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.00 Total: -15.93 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.83 Total: -44.06 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -1.04 Total: -7.61 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.20 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.06 -6.04 -36.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.562 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds