Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00009 * 2 1 4 4 H 1.48501 * 109.47227 * 89.99625 * 3 2 1 5 5 H 1.48501 * 109.47205 * 210.00198 * 3 2 1 6 6 H 1.48501 * 109.47065 * 329.99929 * 3 2 1 7 7 C 1.37878 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99708 * 178.04299 * 7 2 1 9 9 C 1.50698 * 120.00421 * 358.04592 * 7 2 1 10 10 H 1.08998 * 109.46732 * 324.66769 * 9 7 2 11 11 N 1.46900 * 109.47000 * 84.65954 * 9 7 2 12 12 C 1.50694 * 109.47521 * 204.66358 * 9 7 2 13 13 C 1.38484 * 120.01059 * 286.69633 * 12 9 7 14 14 F 1.35097 * 120.02807 * 359.97438 * 13 12 9 15 15 C 1.38437 * 119.94997 * 179.97438 * 13 12 9 16 16 C 1.38223 * 119.97152 * 0.02562 * 15 13 12 17 17 C 1.38224 * 120.02658 * 359.97155 * 16 15 13 18 18 C 1.38176 * 120.01652 * 106.41500 * 12 9 7 19 19 N 1.48004 * 119.98269 * 0.02562 * 18 12 9 20 20 O 1.21803 * 120.00432 * 321.38683 * 19 18 12 21 21 O 1.21805 * 119.99927 * 141.38616 * 19 18 12 22 22 H 0.97001 * 119.99616 * 174.30967 * 1 2 3 23 23 H 1.00896 * 111.00580 * 292.15195 * 11 9 7 24 24 H 1.00902 * 111.00225 * 56.10939 * 11 9 7 25 25 H 1.07992 * 120.01722 * 180.02562 * 15 13 12 26 26 H 1.08000 * 119.98814 * 179.97438 * 16 15 13 27 27 H 1.08000 * 119.97755 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0841 -1.1943 -0.0314 9 6 1.2518 -2.4988 0.0456 10 1 0.3620 -2.3836 0.6646 11 7 0.8549 -2.8824 -1.3157 12 6 2.1362 -3.5691 0.6314 13 6 3.1809 -4.0892 -0.1142 14 9 3.4075 -3.6378 -1.3672 15 6 3.9928 -5.0720 0.4254 16 6 3.7597 -5.5335 1.7073 17 6 2.7167 -5.0136 2.4506 18 6 1.9087 -4.0279 1.9148 19 7 0.7957 -3.4682 2.7139 20 8 0.5399 -2.2789 2.6528 21 8 0.1355 -4.1969 3.4328 22 1 -0.4849 -0.8359 -0.0833 23 1 0.1618 -2.2476 -1.6828 24 1 1.6572 -2.9336 -1.9255 25 1 4.8081 -5.4781 -0.1549 26 1 4.3928 -6.3005 2.1284 27 1 2.5355 -5.3744 3.4523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -41.519335 kcal Electronic energy + Delta-G solvation = -17477.273720 eV Core-core repulsion = 14345.125555 eV Total energy + Delta-G solvation = -3132.148166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -50.10361 -43.29939 -40.29498 -37.78667 -36.94265 -33.76578 -32.77402 -31.46183 -28.02507 -27.29444 -25.09541 -23.61527 -22.65501 -20.38082 -19.75778 -19.35677 -18.78525 -17.67481 -17.47756 -17.03268 -16.78297 -16.13336 -15.75138 -15.16681 -14.84698 -14.47136 -14.07592 -13.61865 -13.45589 -13.23954 -12.71148 -12.68020 -12.58057 -12.21794 -12.00665 -11.61163 -11.48291 -10.73941 -10.56044 -10.03481 -9.44843 -8.67343 -6.47482 -1.11368 -0.14428 0.07887 0.39673 1.47362 1.55516 1.72277 2.15455 2.50083 2.97663 3.11278 3.35440 3.52630 3.69495 3.90872 4.01421 4.29897 4.49212 4.71418 4.86265 4.87052 5.05921 5.17009 5.53126 5.65842 5.95627 6.28064 6.42439 6.48139 6.64930 7.32556 8.65755 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.011284 C = 0.008928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.767075 B = 2480.869564 C = 3135.342867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 1.114 2.886 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.279 1.279 7 C -0.622 4.622 8 H 0.039 0.961 9 C 0.206 3.794 10 H 0.045 0.955 11 N -0.853 5.853 12 C -0.042 4.042 13 C 0.084 3.916 14 F -0.129 7.129 15 C -0.088 4.088 16 C -0.080 4.080 17 C -0.067 4.067 18 C -0.047 4.047 19 N 0.026 4.974 20 O -0.200 6.200 21 O -0.141 6.141 22 H 0.258 0.742 23 H 0.330 0.670 24 H 0.335 0.665 25 H 0.193 0.807 26 H 0.213 0.787 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.759 -12.217 2.279 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.935 3.065 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.204 1.204 7 C -0.661 4.661 8 H 0.058 0.942 9 C 0.097 3.903 10 H 0.063 0.937 11 N -0.384 5.384 12 C -0.045 4.045 13 C 0.064 3.936 14 F -0.107 7.107 15 C -0.106 4.106 16 C -0.098 4.098 17 C -0.086 4.086 18 C -0.130 4.130 19 N 0.543 4.457 20 O -0.404 6.404 21 O -0.366 6.366 22 H 0.069 0.931 23 H 0.141 0.859 24 H 0.150 0.850 25 H 0.210 0.790 26 H 0.229 0.771 27 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.848 -11.444 2.214 15.923 hybrid contribution -0.413 -0.016 -0.408 0.581 sum 10.435 -11.460 1.806 15.604 Atomic orbital electron populations 1.70854 1.07635 1.30331 1.45990 1.27152 0.96446 1.05936 0.91673 0.82986 0.74257 0.71651 0.77559 1.20398 1.19625 1.20448 1.22407 0.93859 0.92574 1.57253 0.94226 1.18330 0.93847 0.89436 0.88719 0.93677 1.59645 1.17478 1.56285 1.04990 1.20160 0.96606 0.95054 0.92637 1.17502 0.96561 0.98380 0.81162 1.91393 1.93374 1.88368 1.37587 1.22049 0.98525 0.92879 0.97189 1.21535 0.96094 1.00204 0.91940 1.21439 0.93204 0.91147 1.02832 1.20915 0.94511 1.04197 0.93394 1.43930 1.01456 1.00702 0.99631 1.94740 1.75202 0.99395 1.71091 1.94374 1.48065 1.57854 1.36305 0.93132 0.85910 0.85016 0.78966 0.77059 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 13.59 21.45 0.29 -55.54 15 2 C -0.01 -0.57 5.46 84.65 0.46 -0.11 15 3 Si 1.11 51.10 29.90 68.60 2.05 53.15 15 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.27 -11.51 7.11 99.48 0.71 -10.81 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 7 C -0.62 -34.93 8.39 25.60 0.21 -34.72 15 8 H 0.04 2.24 7.81 -2.91 -0.02 2.22 15 9 C 0.21 10.73 1.84 43.42 0.08 10.81 15 10 H 0.05 2.67 4.34 -2.39 -0.01 2.66 15 11 N -0.85 -41.24 9.07 -174.96 -1.59 -42.83 15 12 C -0.04 -1.81 4.93 -19.82 -0.10 -1.90 15 13 C 0.08 2.96 6.99 22.38 0.16 3.11 15 14 F -0.13 -4.84 14.40 44.97 0.65 -4.19 15 15 C -0.09 -1.91 10.03 22.31 0.22 -1.69 15 16 C -0.08 -1.37 10.04 22.26 0.22 -1.15 15 17 C -0.07 -1.71 9.67 22.27 0.22 -1.50 15 18 C -0.05 -1.84 6.46 36.37 0.24 -1.61 15 19 N 0.03 1.16 4.12 -46.49 -0.19 0.97 15 20 O -0.20 -10.74 16.38 18.88 0.31 -10.43 15 21 O -0.14 -5.83 18.97 18.88 0.36 -5.47 15 22 H 0.26 16.14 6.30 -92.71 -0.58 15.56 15 23 H 0.33 16.56 8.53 -89.70 -0.76 15.79 15 24 H 0.34 15.34 6.34 -89.69 -0.57 14.77 15 25 H 0.19 2.42 8.06 -2.91 -0.02 2.40 15 26 H 0.21 1.14 8.06 -2.91 -0.02 1.11 15 27 H 0.18 3.39 8.02 -2.91 -0.02 3.37 15 Total: -1.00 -73.27 249.00 3.69 -69.58 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.10 Total: 23.52 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 1.71 Total: -28.75 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -1.49 Total: -97.40 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.67 Total: -15.90 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.65 Total: -4.19 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -73.27 3.69 -69.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.062 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds