Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38264 * 119.98549 * 100.00575 * 12 9 7 14 14 C 1.38216 * 120.05158 * 180.02562 * 13 12 9 15 15 C 1.38222 * 120.02739 * 359.94700 * 14 13 12 16 16 N 1.48002 * 120.01558 * 180.02562 * 15 14 13 17 17 O 1.21798 * 120.00000 * 0.02562 * 16 15 14 18 18 O 1.21800 * 119.99907 * 180.02562 * 16 15 14 19 19 C 1.38443 * 119.97032 * 0.02713 * 15 14 13 20 20 F 1.35106 * 120.02387 * 180.02562 * 19 15 14 21 21 C 1.38172 * 119.98611 * 279.72588 * 12 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 24 24 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 25 25 H 1.08002 * 119.97287 * 359.97438 * 13 12 9 26 26 H 1.07999 * 119.98974 * 179.97438 * 14 13 12 27 27 H 1.08005 * 120.01568 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.4409 -3.1967 -1.1794 14 6 4.9014 -4.5000 -1.1812 15 6 4.9365 -5.2227 -0.0035 16 7 5.4302 -6.6180 -0.0056 17 8 5.8060 -7.1294 -1.0452 18 8 5.4606 -7.2548 1.0322 19 6 4.5098 -4.6409 1.1780 20 9 4.5442 -5.3462 2.3299 21 6 4.0530 -3.3336 1.1794 22 1 -0.4850 0.8400 -0.0004 23 1 3.6769 -0.9604 2.0388 24 1 5.0073 -0.4321 1.1920 25 1 4.4138 -2.6328 -2.1001 26 1 5.2342 -4.9536 -2.1030 27 1 3.7241 -2.8772 2.1013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238593092.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -23.998515 kcal Electronic energy + Delta-G solvation = -16678.116856 eV Core-core repulsion = 13546.728450 eV Total energy + Delta-G solvation = -3131.388406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -49.18411 -41.99976 -39.45542 -36.43556 -35.36015 -32.29415 -30.96116 -30.85566 -27.26082 -25.81672 -23.38851 -22.71288 -20.72081 -19.32770 -18.60970 -17.53199 -17.36019 -16.96689 -16.32549 -15.73362 -15.19297 -15.06694 -14.30547 -14.21300 -13.50511 -12.99320 -12.64564 -12.57858 -11.94569 -11.69586 -11.48976 -11.10635 -11.05049 -10.92275 -10.75681 -10.14824 -9.68258 -9.20771 -8.99213 -8.80577 -8.10936 -6.28499 -4.44335 -0.07582 0.90062 1.42882 1.45876 3.28311 3.37589 3.43272 3.53214 3.71188 4.34149 4.39443 4.60066 4.83715 4.99034 5.09899 5.25964 5.52508 5.56839 5.70172 5.91657 6.13602 6.28328 6.58779 6.61248 7.16597 7.73500 7.73962 7.95603 8.29110 8.66861 9.30488 10.79877 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044657 B = 0.006246 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.854166 B = 4481.638690 C = 4623.489495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.088 3.912 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.315 1.315 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.211 3.789 10 H 0.066 0.934 11 N -0.839 5.839 12 C 0.017 3.983 13 C -0.129 4.129 14 C -0.030 4.030 15 C -0.109 4.109 16 N 0.039 4.961 17 O -0.171 6.171 18 O -0.163 6.163 19 C 0.172 3.828 20 F -0.110 7.110 21 C -0.158 4.158 22 H 0.269 0.731 23 H 0.338 0.662 24 H 0.316 0.684 25 H 0.153 0.847 26 H 0.157 0.843 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -4.554 -0.422 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.118 4.118 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.244 1.244 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.101 3.899 10 H 0.084 0.916 11 N -0.369 5.369 12 C 0.014 3.986 13 C -0.148 4.148 14 C -0.049 4.049 15 C -0.194 4.194 16 N 0.556 4.444 17 O -0.384 6.384 18 O -0.378 6.378 19 C 0.151 3.849 20 F -0.088 7.088 21 C -0.178 4.178 22 H 0.078 0.922 23 H 0.153 0.847 24 H 0.128 0.872 25 H 0.170 0.830 26 H 0.174 0.826 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.212 -3.199 -0.622 9.772 hybrid contribution 0.850 -0.676 0.485 1.189 sum 10.062 -3.876 -0.137 10.783 Atomic orbital electron populations 1.69926 1.06850 1.27947 1.47556 1.25000 0.94647 1.00188 0.92010 0.85842 0.78303 0.80548 0.78322 1.20364 1.24446 1.19881 1.20593 0.86173 0.95073 1.55087 0.90746 1.19016 0.97199 0.82102 0.91555 0.91595 1.59354 1.13448 1.58194 1.05939 1.21815 0.85584 1.00218 0.90995 1.21270 1.00035 0.93658 0.99826 1.20958 0.94145 0.93760 0.96025 1.21110 1.16996 0.84358 0.96935 1.43370 0.98101 1.02577 1.00371 1.94498 1.50230 1.71918 1.21742 1.94577 1.59184 1.62490 1.21537 1.17384 0.96963 0.90446 0.80144 1.91631 1.93206 1.77839 1.46085 1.21134 1.03555 0.91282 1.01826 0.92177 0.84721 0.87241 0.82970 0.82589 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.96 55.43 0.77 -24.40 15 2 C 0.09 2.30 5.47 -17.82 -0.10 2.20 15 3 Si 0.94 21.41 26.03 -169.99 -4.42 16.98 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.32 -7.40 7.11 56.52 0.40 -7.00 15 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 15 7 C -0.53 -13.01 9.29 -34.44 -0.32 -13.33 15 8 H 0.07 2.03 7.98 -52.49 -0.42 1.61 15 9 C 0.21 4.00 2.34 -70.01 -0.16 3.84 15 10 H 0.07 1.26 7.06 -51.93 -0.37 0.90 15 11 N -0.84 -14.54 6.59 -6.65 -0.04 -14.58 15 12 C 0.02 0.27 4.88 -104.64 -0.51 -0.24 15 13 C -0.13 -1.79 9.67 -39.58 -0.38 -2.17 15 14 C -0.03 -0.40 9.55 -39.60 -0.38 -0.78 15 15 C -0.11 -1.70 6.86 -79.89 -0.55 -2.25 15 16 N 0.04 0.66 4.45 33.99 0.15 0.81 15 17 O -0.17 -2.83 18.45 -29.46 -0.54 -3.37 15 18 O -0.16 -2.92 17.42 -29.46 -0.51 -3.44 15 19 C 0.17 2.72 7.25 -39.42 -0.29 2.43 15 20 F -0.11 -1.79 15.48 2.25 0.03 -1.76 15 21 C -0.16 -2.44 9.27 -39.52 -0.37 -2.81 15 22 H 0.27 7.19 8.31 -40.82 -0.34 6.86 15 23 H 0.34 5.55 7.33 -39.29 -0.29 5.26 15 24 H 0.32 4.51 9.06 -39.30 -0.36 4.16 15 25 H 0.15 1.80 8.04 -52.49 -0.42 1.38 15 26 H 0.16 1.73 7.61 -52.49 -0.40 1.33 15 27 H 0.16 2.25 6.65 -52.48 -0.35 1.90 15 LS Contribution 249.76 15.07 3.76 3.76 Total: -1.00 -28.62 249.76 -5.62 -34.24 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -1.77 Total: 4.86 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -3.05 Total: -13.11 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.88 Total: -38.17 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -1.06 Total: -6.81 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.03 Total: -1.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.42 Total: 16.98 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.62 -5.62 -34.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593092.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.240 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds