Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 N 1.46902 * 109.47072 * 59.99845 * 9 7 2 12 12 C 1.50703 * 109.46925 * 179.97438 * 9 7 2 13 13 C 1.38264 * 119.98549 * 100.00575 * 12 9 7 14 14 C 1.38216 * 120.05158 * 180.02562 * 13 12 9 15 15 C 1.38222 * 120.02739 * 359.94700 * 14 13 12 16 16 N 1.48002 * 120.01558 * 180.02562 * 15 14 13 17 17 O 1.21798 * 120.00000 * 0.02562 * 16 15 14 18 18 O 1.21800 * 119.99907 * 180.02562 * 16 15 14 19 19 C 1.38443 * 119.97032 * 0.02713 * 15 14 13 20 20 F 1.35106 * 120.02387 * 180.02562 * 19 15 14 21 21 C 1.38172 * 119.98611 * 279.72588 * 12 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.00903 * 110.99961 * 59.99933 * 11 9 7 24 24 H 1.00891 * 110.99940 * 183.95812 * 11 9 7 25 25 H 1.08002 * 119.97287 * 359.97438 * 13 12 9 26 26 H 1.07999 * 119.98974 * 179.97438 * 14 13 12 27 27 H 1.08005 * 120.01568 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6149 -0.0001 13 6 4.4409 -3.1967 -1.1794 14 6 4.9014 -4.5000 -1.1812 15 6 4.9365 -5.2227 -0.0035 16 7 5.4302 -6.6180 -0.0056 17 8 5.8060 -7.1294 -1.0452 18 8 5.4606 -7.2548 1.0322 19 6 4.5098 -4.6409 1.1780 20 9 4.5442 -5.3462 2.3299 21 6 4.0530 -3.3336 1.1794 22 1 -0.4850 0.8400 -0.0004 23 1 3.6769 -0.9604 2.0388 24 1 5.0073 -0.4321 1.1920 25 1 4.4138 -2.6328 -2.1001 26 1 5.2342 -4.9536 -2.1030 27 1 3.7241 -2.8772 2.1013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238593092.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = -42.597238 kcal Electronic energy + Delta-G solvation = -16678.923357 eV Core-core repulsion = 13546.728450 eV Total energy + Delta-G solvation = -3132.194907 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -50.43576 -43.30153 -40.69808 -37.75342 -36.83168 -34.14953 -32.23306 -32.09504 -28.80036 -27.35666 -24.71939 -23.99758 -22.18234 -20.57961 -19.91804 -19.08300 -18.81370 -18.37095 -17.61551 -17.00456 -16.69695 -16.41839 -15.94207 -15.39172 -14.87933 -14.41550 -14.24096 -13.87121 -13.49039 -12.94235 -12.82365 -12.70448 -12.57551 -12.38796 -12.23245 -11.77925 -11.55541 -10.78464 -10.50822 -10.21945 -9.51590 -8.27470 -6.44637 -1.35798 -0.25525 0.14978 0.19699 1.56208 1.62175 1.74243 2.08771 2.50399 2.51714 3.07221 3.16239 3.40248 3.72395 3.90538 4.03307 4.17107 4.40736 4.49917 4.69518 4.85429 5.03274 5.22881 5.35767 5.46460 6.05236 6.34679 6.40009 6.70655 6.89753 7.33633 8.84939 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044657 B = 0.006246 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.854166 B = 4481.638690 C = 4623.489495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.033 3.967 3 Si 0.999 3.001 4 H -0.280 1.280 5 H -0.329 1.329 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.034 0.966 9 C 0.219 3.781 10 H 0.076 0.924 11 N -0.845 5.845 12 C 0.003 3.997 13 C -0.117 4.117 14 C -0.015 4.015 15 C -0.115 4.115 16 N 0.037 4.963 17 O -0.148 6.148 18 O -0.203 6.203 19 C 0.160 3.840 20 F -0.117 7.117 21 C -0.155 4.155 22 H 0.266 0.734 23 H 0.343 0.657 24 H 0.340 0.660 25 H 0.180 0.820 26 H 0.188 0.812 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 -4.162 -1.507 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.167 4.167 3 Si 0.828 3.172 4 H -0.206 1.206 5 H -0.260 1.260 6 H -0.171 1.171 7 C -0.561 4.561 8 H 0.052 0.948 9 C 0.108 3.892 10 H 0.094 0.906 11 N -0.377 5.377 12 C 0.000 4.000 13 C -0.136 4.136 14 C -0.034 4.034 15 C -0.200 4.200 16 N 0.552 4.448 17 O -0.368 6.368 18 O -0.408 6.408 19 C 0.139 3.861 20 F -0.095 7.095 21 C -0.175 4.175 22 H 0.075 0.925 23 H 0.158 0.842 24 H 0.154 0.846 25 H 0.197 0.803 26 H 0.205 0.795 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.367 -2.841 -1.616 11.828 hybrid contribution 0.221 -0.900 0.753 1.194 sum 11.588 -3.741 -0.863 12.207 Atomic orbital electron populations 1.70070 1.08794 1.28477 1.50891 1.25827 0.95059 1.03670 0.92185 0.84874 0.77862 0.76337 0.78106 1.20614 1.25977 1.17086 1.20840 0.89377 0.92991 1.52864 0.94802 1.18695 0.93688 0.84254 0.92519 0.90646 1.59048 1.15352 1.57898 1.05443 1.21595 0.87130 0.99083 0.92174 1.21547 0.98442 0.93752 0.99906 1.21283 0.92633 0.93222 0.96230 1.21363 1.17133 0.83764 0.97730 1.43549 0.97980 1.03041 1.00212 1.94468 1.48850 1.72053 1.21459 1.94594 1.61114 1.63191 1.21874 1.17465 0.97805 0.90635 0.80206 1.91612 1.93357 1.78005 1.46535 1.21145 1.03117 0.91126 1.02073 0.92501 0.84197 0.84599 0.80262 0.79522 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.90 13.96 21.45 0.30 -54.60 15 2 C 0.03 1.72 5.47 84.65 0.46 2.18 15 3 Si 1.00 43.25 26.03 68.60 1.79 45.04 15 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.33 -14.92 7.11 99.48 0.71 -14.21 15 6 H -0.25 -9.51 6.54 99.48 0.65 -8.85 15 7 C -0.52 -25.38 9.29 25.60 0.24 -25.15 15 8 H 0.03 1.88 7.98 -2.92 -0.02 1.86 15 9 C 0.22 7.75 2.34 43.43 0.10 7.86 15 10 H 0.08 2.58 7.06 -2.39 -0.02 2.57 15 11 N -0.85 -26.86 6.59 -174.94 -1.15 -28.01 15 12 C 0.00 0.09 4.88 -19.87 -0.10 -0.01 15 13 C -0.12 -2.82 9.67 22.27 0.22 -2.61 15 14 C -0.01 -0.35 9.55 22.26 0.21 -0.13 15 15 C -0.11 -3.33 6.86 36.42 0.25 -3.08 15 16 N 0.04 1.20 4.45 -46.37 -0.21 1.00 15 17 O -0.15 -4.49 18.45 18.89 0.35 -4.14 15 18 O -0.20 -7.17 17.42 18.89 0.33 -6.84 15 19 C 0.16 4.85 7.25 22.38 0.16 5.01 15 20 F -0.12 -3.79 15.48 44.97 0.70 -3.09 15 21 C -0.16 -4.54 9.27 22.31 0.21 -4.34 15 22 H 0.27 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.34 10.55 7.33 -89.69 -0.66 9.89 15 24 H 0.34 8.42 9.06 -89.70 -0.81 7.61 15 25 H 0.18 3.37 8.04 -2.91 -0.02 3.34 15 26 H 0.19 3.20 7.61 -2.91 -0.02 3.18 15 27 H 0.16 4.45 6.65 -2.91 -0.02 4.43 15 Total: -1.00 -62.17 249.76 3.57 -58.60 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.28 Total: 12.31 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 1.75 Total: -20.26 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -1.06 Total: -81.62 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.68 Total: -10.98 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.70 Total: -3.09 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.79 Total: 45.04 kcal Total: -62.17 3.57 -58.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593092.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.002 kcal (2) G-P(sol) polarization free energy of solvation -62.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds