Wall clock time and date at job start Mon Mar 30 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38219 * 120.01046 * 264.99646 * 12 9 7 14 14 C 1.38227 * 120.02437 * 179.97438 * 13 12 9 15 15 C 1.38268 * 120.05065 * 0.02562 * 14 13 12 16 16 N 1.48007 * 119.98566 * 179.97438 * 15 14 13 17 17 O 1.21803 * 119.99811 * 359.97438 * 16 15 14 18 18 O 1.21793 * 119.99742 * 179.97438 * 16 15 14 19 19 C 1.38175 * 120.02416 * 359.94803 * 15 14 13 20 20 C 1.38431 * 120.01451 * 84.72365 * 12 9 7 21 21 F 1.35105 * 120.02623 * 0.02562 * 20 12 9 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 24 24 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 25 25 H 1.07998 * 119.98924 * 359.97438 * 13 12 9 26 26 H 1.08000 * 119.97335 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.00994 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.6012 -4.2384 -1.1900 14 6 3.4999 -5.2886 -1.1892 15 6 4.0284 -5.7468 0.0035 16 7 4.9901 -6.8718 0.0027 17 8 5.3154 -7.3942 -1.0484 18 8 5.4562 -7.2752 1.0532 19 6 3.6596 -5.1543 1.1961 20 6 2.7633 -4.0987 1.1960 21 9 2.4053 -3.5158 2.3611 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9653 -2.5259 -2.0381 24 1 -0.1570 -3.4139 -1.1908 25 1 2.1887 -3.8816 -2.1221 26 1 3.7888 -5.7523 -2.1208 27 1 4.0729 -5.5120 2.1275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238593216.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:50 Heat of formation + Delta-G solvation = -26.039736 kcal Electronic energy + Delta-G solvation = -16699.782572 eV Core-core repulsion = 13568.305652 eV Total energy + Delta-G solvation = -3131.476920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.74260 -42.12471 -39.31208 -36.53401 -35.49542 -32.15139 -30.89751 -30.42889 -27.13857 -25.32308 -23.25063 -22.67343 -20.95723 -19.42324 -18.68987 -17.51774 -17.23927 -16.42204 -16.24002 -15.94619 -15.37154 -14.79490 -14.16645 -13.78742 -13.47129 -12.98698 -12.68421 -12.35377 -11.91848 -11.64672 -11.48555 -11.12737 -11.07778 -10.87002 -10.63639 -10.17747 -9.62948 -9.11163 -8.63956 -8.48518 -7.94911 -6.43747 -4.30804 -0.09994 0.89928 1.41591 1.43478 3.26942 3.36711 3.37672 3.55966 4.11722 4.40567 4.42122 4.59770 4.91146 4.93473 5.11835 5.23011 5.58291 5.69144 5.71329 5.95793 6.05337 6.28742 6.61372 6.73885 7.56539 7.68857 7.90142 8.30084 8.37809 8.76473 9.53211 10.96786 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036453 B = 0.006435 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.925725 B = 4350.342620 C = 4462.072468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.044 3.956 3 Si 1.066 2.934 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.615 4.615 8 H 0.049 0.951 9 C 0.234 3.766 10 H 0.056 0.944 11 N -0.827 5.827 12 C -0.045 4.045 13 C -0.106 4.106 14 C -0.060 4.060 15 C -0.046 4.046 16 N 0.037 4.963 17 O -0.167 6.167 18 O -0.169 6.169 19 C -0.096 4.096 20 C 0.106 3.894 21 F -0.115 7.115 22 H 0.290 0.710 23 H 0.330 0.670 24 H 0.307 0.693 25 H 0.151 0.849 26 H 0.153 0.847 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -8.791 -1.299 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.167 4.167 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.653 4.653 8 H 0.067 0.933 9 C 0.125 3.875 10 H 0.073 0.927 11 N -0.356 5.356 12 C -0.049 4.049 13 C -0.125 4.125 14 C -0.079 4.079 15 C -0.130 4.130 16 N 0.555 4.445 17 O -0.382 6.382 18 O -0.383 6.383 19 C -0.116 4.116 20 C 0.085 3.915 21 F -0.093 7.093 22 H 0.103 0.897 23 H 0.145 0.855 24 H 0.119 0.881 25 H 0.168 0.832 26 H 0.170 0.830 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.339 -5.912 -0.989 6.862 hybrid contribution 1.110 -2.817 0.025 3.028 sum 4.449 -8.730 -0.965 9.845 Atomic orbital electron populations 1.70576 1.06823 1.32882 1.40965 1.25690 0.96494 1.01895 0.92608 0.83596 0.74979 0.75414 0.76588 1.20598 1.21423 1.21419 1.21536 0.93385 0.89582 1.60832 0.93284 1.18579 0.87948 0.89648 0.91365 0.92661 1.59365 1.28294 1.42821 1.05096 1.22341 0.96073 0.95515 0.90945 1.20925 0.97669 0.95024 0.98919 1.21017 0.94508 0.95585 0.96809 1.20547 1.01017 0.95043 0.96372 1.43523 0.99880 1.00848 1.00273 1.94510 1.63842 1.58824 1.20982 1.94520 1.56463 1.66279 1.21089 1.20811 0.97047 0.95236 0.98515 1.17140 0.97910 0.93652 0.82766 1.91574 1.90020 1.82692 1.45036 0.89690 0.85542 0.88125 0.83154 0.82970 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.51 55.43 0.75 -24.05 15 2 C 0.04 1.18 5.39 -17.82 -0.10 1.08 15 3 Si 1.07 23.78 29.90 -169.99 -5.08 18.69 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.62 -15.66 8.71 -34.44 -0.30 -15.96 15 8 H 0.05 1.27 7.74 -52.48 -0.41 0.87 15 9 C 0.23 5.10 2.23 -70.02 -0.16 4.94 15 10 H 0.06 1.34 7.66 -51.93 -0.40 0.94 15 11 N -0.83 -16.23 7.39 -6.65 -0.05 -16.28 15 12 C -0.04 -0.82 4.99 -104.56 -0.52 -1.34 15 13 C -0.11 -1.59 9.27 -39.59 -0.37 -1.95 15 14 C -0.06 -0.83 9.55 -39.57 -0.38 -1.20 15 15 C -0.05 -0.71 6.85 -79.96 -0.55 -1.25 15 16 N 0.04 0.59 4.45 33.95 0.15 0.75 15 17 O -0.17 -2.65 18.45 -29.46 -0.54 -3.20 15 18 O -0.17 -2.76 18.45 -29.46 -0.54 -3.31 15 19 C -0.10 -1.48 9.53 -39.52 -0.38 -1.86 15 20 C 0.11 1.87 7.24 -39.42 -0.29 1.59 15 21 F -0.12 -2.20 16.57 2.25 0.04 -2.16 15 22 H 0.29 8.11 6.39 -40.82 -0.26 7.85 15 23 H 0.33 6.03 7.21 -39.29 -0.28 5.74 15 24 H 0.31 5.13 9.06 -39.29 -0.36 4.77 15 25 H 0.15 1.97 6.29 -52.49 -0.33 1.64 15 26 H 0.15 1.74 7.61 -52.49 -0.40 1.34 15 27 H 0.16 2.16 7.61 -52.49 -0.40 1.76 15 LS Contribution 253.39 15.07 3.82 3.82 Total: -1.00 -28.16 253.39 -6.12 -34.28 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -1.63 Total: 7.42 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.03 Total: -15.95 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.85 Total: -39.59 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.09 Total: -6.51 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.08 Total: 18.69 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.16 -6.12 -34.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593216.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.242 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds