Wall clock time and date at job start Mon Mar 30 2020 03:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47738 * 270.00429 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00772 * 3 2 1 6 6 H 1.48507 * 109.46950 * 150.00178 * 3 2 1 7 7 C 1.37876 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00689 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.46845 * 299.99887 * 9 7 2 11 11 N 1.46904 * 109.47094 * 59.99319 * 9 7 2 12 12 C 1.50694 * 109.47677 * 179.97438 * 9 7 2 13 13 C 1.38225 * 120.00845 * 264.99892 * 12 9 7 14 14 C 1.38220 * 120.02081 * 179.97438 * 13 12 9 15 15 C 1.38270 * 120.05642 * 0.02562 * 14 13 12 16 16 C 1.38178 * 120.02255 * 359.97438 * 15 14 13 17 17 N 1.47996 * 120.01079 * 180.02562 * 16 15 14 18 18 O 1.21804 * 120.00436 * 359.97419 * 17 16 15 19 19 O 1.21806 * 120.00182 * 179.97438 * 17 16 15 20 20 C 1.38433 * 120.01621 * 84.97514 * 12 9 7 21 21 F 1.35106 * 120.02707 * 0.02562 * 20 12 9 22 22 H 0.96996 * 120.00221 * 359.97438 * 1 2 3 23 23 H 1.00897 * 110.99542 * 59.99975 * 11 9 7 24 24 H 1.00895 * 111.00235 * 183.96128 * 11 9 7 25 25 H 1.07994 * 119.98973 * 359.70315 * 13 12 9 26 26 H 1.08003 * 119.97247 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.99131 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8745 -0.6801 -0.8912 11 7 4.0017 -0.5018 1.1982 12 6 4.0139 -2.6149 -0.0010 13 6 4.3431 -3.2316 1.1914 14 6 4.8034 -4.5349 1.1919 15 6 4.9355 -5.2231 -0.0001 16 6 4.6069 -4.6086 -1.1933 17 7 4.7479 -5.3457 -2.4689 18 8 5.1541 -6.4940 -2.4672 19 8 4.4578 -4.8040 -3.5206 20 6 4.1452 -3.3031 -1.1949 21 9 3.8237 -2.7013 -2.3611 22 1 -0.4850 0.8400 0.0004 23 1 3.6785 -0.9594 2.0373 24 1 5.0082 -0.4317 1.1893 25 1 4.2449 -2.6935 2.1226 26 1 5.0601 -5.0162 2.1241 27 1 5.2956 -6.2413 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:54 Heat of formation + Delta-G solvation = -11.358538 kcal Electronic energy + Delta-G solvation = -17005.908123 eV Core-core repulsion = 13875.067828 eV Total energy + Delta-G solvation = -3130.840295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.83532 -41.93462 -39.35444 -36.36670 -35.40084 -32.21906 -31.36938 -30.27003 -26.84331 -26.20291 -23.52235 -22.44949 -20.75824 -18.74106 -18.43135 -17.56009 -17.43515 -17.03052 -16.33462 -15.40007 -15.24536 -14.94909 -14.43530 -13.86157 -13.22556 -12.98958 -12.62118 -12.43020 -11.90542 -11.63562 -11.42065 -10.97113 -10.95993 -10.94412 -10.62337 -10.23675 -9.61291 -9.37867 -8.74376 -8.62530 -7.56527 -6.18103 -4.32602 -0.05678 0.97732 1.45467 1.50588 3.28745 3.40820 3.51090 3.77328 3.88373 4.43757 4.54472 4.64471 4.82187 4.94541 5.09531 5.31472 5.53994 5.64819 5.76878 5.92381 6.05902 6.30333 6.61018 6.64445 7.29048 7.79825 7.81501 8.04897 8.39039 8.76465 9.42718 10.90906 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.007965 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.910533 B = 3514.714390 C = 3928.294635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.091 3.909 3 Si 0.867 3.133 4 H -0.293 1.293 5 H -0.301 1.301 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.223 3.777 10 H 0.059 0.941 11 N -0.830 5.830 12 C -0.103 4.103 13 C -0.051 4.051 14 C -0.128 4.128 15 C -0.055 4.055 16 C -0.088 4.088 17 N 0.035 4.965 18 O -0.172 6.172 19 O -0.151 6.151 20 C 0.177 3.823 21 F -0.095 7.095 22 H 0.267 0.733 23 H 0.332 0.668 24 H 0.312 0.688 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -6.855 3.998 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.114 4.114 3 Si 0.693 3.307 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.114 1.114 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.113 3.887 10 H 0.076 0.924 11 N -0.360 5.360 12 C -0.107 4.107 13 C -0.070 4.070 14 C -0.147 4.147 15 C -0.074 4.074 16 C -0.173 4.173 17 N 0.553 4.447 18 O -0.385 6.385 19 O -0.369 6.369 20 C 0.155 3.845 21 F -0.073 7.073 22 H 0.076 0.924 23 H 0.147 0.853 24 H 0.124 0.876 25 H 0.164 0.836 26 H 0.165 0.835 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.794 -5.756 4.317 12.972 hybrid contribution 0.494 -0.297 -0.424 0.716 sum 11.288 -6.053 3.893 13.387 Atomic orbital electron populations 1.69925 1.06991 1.27802 1.47854 1.24947 0.94551 1.00117 0.91832 0.87171 0.84440 0.80855 0.78211 1.22034 1.22788 1.11446 1.20542 0.86235 0.94894 1.55146 0.91203 1.18639 0.97091 0.81577 0.91385 0.92361 1.60027 1.13053 1.57488 1.05471 1.21696 0.96801 1.02200 0.89988 1.21374 0.93032 0.94254 0.98325 1.21148 1.01326 0.94739 0.97469 1.20804 0.96297 1.01018 0.89276 1.21317 1.17050 0.93483 0.85412 1.43405 0.97904 1.00751 1.02625 1.94481 1.48031 1.02127 1.93830 1.94616 1.52223 1.70506 1.19531 1.17294 0.95446 0.88006 0.83757 1.91664 1.88672 1.82505 1.44423 0.92367 0.85261 0.87604 0.83562 0.83528 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.43 0.77 -25.73 15 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 15 3 Si 0.87 20.45 26.94 -169.99 -4.58 15.88 15 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 5 H -0.30 -7.33 7.11 56.52 0.40 -6.92 15 6 H -0.19 -4.08 5.17 56.52 0.29 -3.79 15 7 C -0.53 -13.87 9.29 -34.44 -0.32 -14.19 15 8 H 0.07 2.04 7.98 -52.48 -0.42 1.62 15 9 C 0.22 4.60 2.12 -70.02 -0.15 4.45 15 10 H 0.06 1.28 7.22 -51.93 -0.38 0.91 15 11 N -0.83 -14.51 5.43 -6.65 -0.04 -14.54 15 12 C -0.10 -1.81 4.99 -104.56 -0.52 -2.33 15 13 C -0.05 -0.69 9.27 -39.59 -0.37 -1.06 15 14 C -0.13 -1.42 10.04 -39.58 -0.40 -1.82 15 15 C -0.05 -0.70 9.55 -39.59 -0.38 -1.08 15 16 C -0.09 -1.47 6.86 -79.89 -0.55 -2.01 15 17 N 0.04 0.64 4.45 33.99 0.15 0.79 15 18 O -0.17 -2.95 18.45 -29.46 -0.54 -3.49 15 19 O -0.15 -2.98 17.43 -29.46 -0.51 -3.49 15 20 C 0.18 3.30 7.19 -39.42 -0.28 3.01 15 21 F -0.09 -1.99 14.79 2.25 0.03 -1.96 15 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 23 H 0.33 5.31 7.20 -39.29 -0.28 5.02 15 24 H 0.31 4.49 9.06 -39.29 -0.36 4.13 15 25 H 0.15 1.64 6.29 -52.49 -0.33 1.31 15 26 H 0.15 1.07 8.06 -52.48 -0.42 0.64 15 27 H 0.15 1.60 7.61 -52.49 -0.40 1.20 15 LS Contribution 247.34 15.07 3.73 3.73 Total: -1.00 -31.02 247.34 -5.88 -36.90 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -1.83 Total: 4.55 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.06 Total: -12.61 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.89 Total: -39.49 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -1.06 Total: -6.99 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.58 Total: 15.88 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.02 -5.88 -36.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.540 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds