Wall clock time and date at job start Mon Mar 30 2020 03:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47738 * 270.00429 * 3 2 1 5 5 H 1.48501 * 109.47025 * 30.00772 * 3 2 1 6 6 H 1.48507 * 109.46950 * 150.00178 * 3 2 1 7 7 C 1.37876 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99874 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00689 * 179.97438 * 7 2 1 10 10 H 1.09005 * 109.46845 * 299.99887 * 9 7 2 11 11 N 1.46904 * 109.47094 * 59.99319 * 9 7 2 12 12 C 1.50694 * 109.47677 * 179.97438 * 9 7 2 13 13 C 1.38225 * 120.00845 * 264.99892 * 12 9 7 14 14 C 1.38220 * 120.02081 * 179.97438 * 13 12 9 15 15 C 1.38270 * 120.05642 * 0.02562 * 14 13 12 16 16 C 1.38178 * 120.02255 * 359.97438 * 15 14 13 17 17 N 1.47996 * 120.01079 * 180.02562 * 16 15 14 18 18 O 1.21804 * 120.00436 * 359.97419 * 17 16 15 19 19 O 1.21806 * 120.00182 * 179.97438 * 17 16 15 20 20 C 1.38433 * 120.01621 * 84.97514 * 12 9 7 21 21 F 1.35106 * 120.02707 * 0.02562 * 20 12 9 22 22 H 0.96996 * 120.00221 * 359.97438 * 1 2 3 23 23 H 1.00897 * 110.99542 * 59.99975 * 11 9 7 24 24 H 1.00895 * 111.00235 * 183.96128 * 11 9 7 25 25 H 1.07994 * 119.98973 * 359.70315 * 13 12 9 26 26 H 1.08003 * 119.97247 * 180.02562 * 14 13 12 27 27 H 1.08000 * 119.99131 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8745 -0.6801 -0.8912 11 7 4.0017 -0.5018 1.1982 12 6 4.0139 -2.6149 -0.0010 13 6 4.3431 -3.2316 1.1914 14 6 4.8034 -4.5349 1.1919 15 6 4.9355 -5.2231 -0.0001 16 6 4.6069 -4.6086 -1.1933 17 7 4.7479 -5.3457 -2.4689 18 8 5.1541 -6.4940 -2.4672 19 8 4.4578 -4.8040 -3.5206 20 6 4.1452 -3.3031 -1.1949 21 9 3.8237 -2.7013 -2.3611 22 1 -0.4850 0.8400 0.0004 23 1 3.6785 -0.9594 2.0373 24 1 5.0082 -0.4317 1.1893 25 1 4.2449 -2.6935 2.1226 26 1 5.0601 -5.0162 2.1241 27 1 5.2956 -6.2413 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:53 Heat of formation + Delta-G solvation = -33.364017 kcal Electronic energy + Delta-G solvation = -17006.862353 eV Core-core repulsion = 13875.067828 eV Total energy + Delta-G solvation = -3131.794525 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -50.28712 -43.30731 -40.57553 -37.75539 -36.92818 -34.17845 -32.61038 -31.55637 -28.55027 -27.60393 -25.05684 -23.66406 -22.26218 -20.09000 -19.82928 -19.20046 -18.80662 -18.61302 -17.65867 -16.92374 -16.66330 -16.43621 -15.93468 -15.41192 -14.52185 -14.44602 -14.20687 -13.82405 -13.24748 -13.13032 -12.84930 -12.77154 -12.46188 -12.39666 -12.21410 -11.91939 -11.58731 -10.82194 -10.59941 -9.97065 -9.06480 -8.30532 -6.46879 -1.34835 -0.17947 0.16731 0.22066 1.50729 1.57199 1.90032 2.14672 2.55623 2.65503 3.07465 3.28378 3.51574 3.81707 3.84195 4.03656 4.14983 4.51670 4.61642 4.78765 4.88590 5.03288 5.10412 5.39768 5.49630 6.03241 6.35925 6.39522 6.67969 6.97378 7.31970 8.82471 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.007965 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.910533 B = 3514.714390 C = 3928.294635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.030 3.970 3 Si 0.925 3.075 4 H -0.309 1.309 5 H -0.311 1.311 6 H -0.144 1.144 7 C -0.523 4.523 8 H 0.024 0.976 9 C 0.233 3.767 10 H 0.040 0.960 11 N -0.830 5.830 12 C -0.128 4.128 13 C -0.037 4.037 14 C -0.099 4.099 15 C -0.037 4.037 16 C -0.102 4.102 17 N 0.034 4.966 18 O -0.126 6.126 19 O -0.226 6.226 20 C 0.138 3.862 21 F -0.126 7.126 22 H 0.265 0.735 23 H 0.346 0.654 24 H 0.339 0.661 25 H 0.176 0.824 26 H 0.206 0.794 27 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.430 -8.246 7.137 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.169 4.169 3 Si 0.751 3.249 4 H -0.237 1.237 5 H -0.240 1.240 6 H -0.064 1.064 7 C -0.561 4.561 8 H 0.042 0.958 9 C 0.122 3.878 10 H 0.058 0.942 11 N -0.363 5.363 12 C -0.132 4.132 13 C -0.055 4.055 14 C -0.117 4.117 15 C -0.055 4.055 16 C -0.188 4.188 17 N 0.549 4.451 18 O -0.353 6.353 19 O -0.425 6.425 20 C 0.116 3.884 21 F -0.104 7.104 22 H 0.073 0.927 23 H 0.162 0.838 24 H 0.154 0.846 25 H 0.193 0.807 26 H 0.223 0.777 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.764 -7.042 7.373 17.129 hybrid contribution -0.354 -0.167 -1.246 1.306 sum 13.410 -7.209 6.127 16.412 Atomic orbital electron populations 1.70082 1.09014 1.28393 1.51109 1.25897 0.95121 1.04014 0.91890 0.86387 0.85078 0.75962 0.77522 1.23709 1.23955 1.06400 1.20798 0.89583 0.92656 1.53100 0.95807 1.18094 0.93423 0.84233 0.92016 0.94231 1.59549 1.15130 1.57072 1.04575 1.21459 0.99340 1.01019 0.91373 1.21806 0.90893 0.95396 0.97445 1.21780 0.97928 0.93162 0.98825 1.21444 0.93787 1.02314 0.88002 1.21573 1.18439 0.93057 0.85682 1.43654 0.97519 1.00811 1.03109 1.94415 1.45193 1.01857 1.93868 1.94647 1.56017 1.71205 1.20645 1.17707 0.97906 0.89402 0.83375 1.91575 1.89473 1.83192 1.46138 0.92686 0.83751 0.84635 0.80686 0.77712 0.79296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.96 21.45 0.30 -58.72 15 2 C 0.03 1.72 5.47 84.65 0.46 2.18 15 3 Si 0.93 42.70 26.94 68.60 1.85 44.55 15 4 H -0.31 -14.94 7.11 99.48 0.71 -14.23 15 5 H -0.31 -14.82 7.11 99.48 0.71 -14.11 15 6 H -0.14 -5.51 5.17 99.48 0.51 -5.00 15 7 C -0.52 -28.16 9.29 25.60 0.24 -27.93 15 8 H 0.02 1.46 7.98 -2.91 -0.02 1.43 15 9 C 0.23 9.48 2.12 43.42 0.09 9.57 15 10 H 0.04 1.76 7.22 -2.38 -0.02 1.74 15 11 N -0.83 -26.22 5.43 -174.95 -0.95 -27.17 15 12 C -0.13 -4.34 4.99 -19.82 -0.10 -4.44 15 13 C -0.04 -0.83 9.27 22.26 0.21 -0.62 15 14 C -0.10 -1.55 10.04 22.27 0.22 -1.32 15 15 C -0.04 -0.76 9.55 22.26 0.21 -0.55 15 16 C -0.10 -3.27 6.86 36.42 0.25 -3.02 15 17 N 0.03 1.22 4.45 -46.37 -0.21 1.02 15 18 O -0.13 -4.01 18.45 18.88 0.35 -3.67 15 19 O -0.23 -9.43 17.43 18.88 0.33 -9.10 15 20 C 0.14 5.19 7.19 22.37 0.16 5.35 15 21 F -0.13 -5.68 14.79 44.97 0.66 -5.01 15 22 H 0.26 15.63 8.31 -92.71 -0.77 14.86 15 23 H 0.35 9.62 7.20 -89.70 -0.65 8.97 15 24 H 0.34 8.19 9.06 -89.70 -0.81 7.38 15 25 H 0.18 2.88 6.29 -2.91 -0.02 2.86 15 26 H 0.21 1.03 8.06 -2.91 -0.02 1.01 15 27 H 0.19 2.64 7.61 -2.91 -0.02 2.62 15 Total: -1.00 -75.01 247.34 3.68 -71.34 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -0.41 Total: 7.54 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 1.75 Total: -20.77 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -0.86 Total: -84.88 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.68 Total: -12.76 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.66 Total: -5.01 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.85 Total: 44.55 kcal Total: -75.01 3.68 -71.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.974 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds