Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 11 11 N 1.46902 * 109.47448 * 60.00146 * 9 7 2 12 12 C 1.50707 * 109.46656 * 179.97438 * 9 7 2 13 13 C 1.38711 * 120.30144 * 279.72342 * 12 9 7 14 14 N 1.31404 * 120.98652 * 179.72447 * 13 12 9 15 15 C 1.32848 * 121.66292 * 0.58849 * 14 13 12 16 16 C 1.47890 * 119.75725 * 179.70146 * 15 14 13 17 17 O 1.21448 * 120.00284 * 179.97438 * 16 15 14 18 18 O 1.34699 * 119.99689 * 359.97410 * 16 15 14 19 19 C 1.39602 * 120.49041 * 359.67859 * 15 14 13 20 20 F 1.35094 * 120.50935 * 180.02562 * 19 15 14 21 21 C 1.38438 * 120.29668 * 100.00315 * 12 9 7 22 22 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99614 * 296.04899 * 11 9 7 24 24 H 1.00906 * 111.00208 * 59.99391 * 11 9 7 25 25 H 1.08001 * 119.50097 * 0.02562 * 13 12 9 26 26 H 0.96700 * 116.99683 * 179.97438 * 18 16 15 27 27 H 1.08007 * 120.76711 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8746 -0.6800 -0.8911 11 7 4.0017 -0.5017 1.1983 12 6 4.0140 -2.6148 -0.0010 13 6 4.0570 -3.3418 1.1796 14 7 4.4875 -4.5832 1.1942 15 6 4.9082 -5.1885 0.0891 16 6 5.3903 -6.5851 0.1552 17 8 5.7755 -7.1429 -0.8525 18 8 5.4021 -7.2384 1.3331 19 6 4.8983 -4.5163 -1.1344 20 9 5.3256 -5.1316 -2.2586 21 6 4.4421 -3.2043 -1.1782 22 1 -0.4849 0.8401 -0.0004 23 1 3.7322 0.4706 1.1901 24 1 3.6785 -0.9594 2.0375 25 1 3.7273 -2.8821 2.0995 26 1 5.7255 -8.1497 1.3263 27 1 4.4219 -2.6572 -2.1092 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238597015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = -92.556596 kcal Electronic energy + Delta-G solvation = -16604.731489 eV Core-core repulsion = 13470.370182 eV Total energy + Delta-G solvation = -3134.361307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.83545 -40.45840 -39.37050 -36.04593 -35.62002 -32.46803 -31.78044 -30.45414 -26.77911 -25.11282 -23.56446 -22.27816 -20.60408 -18.38865 -17.62721 -17.35165 -16.88589 -16.51251 -16.07587 -15.62230 -15.12414 -14.83809 -14.24261 -13.66956 -13.31205 -13.12628 -12.91579 -12.87441 -12.16034 -12.03834 -11.53052 -11.29871 -11.05299 -10.76400 -10.60694 -9.90101 -9.53748 -9.40084 -8.99055 -8.75667 -7.83691 -6.44478 -4.52491 0.61369 1.25861 2.51682 2.87018 2.98772 3.11729 3.15014 3.87979 4.03616 4.10617 4.37265 4.74134 4.90828 5.09783 5.16460 5.53316 5.66781 5.78553 5.97251 6.21099 6.40415 6.70555 6.79411 7.14018 7.66837 7.77816 7.97211 8.03211 8.18870 8.59437 9.11218 10.67246 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043528 B = 0.006234 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.116744 B = 4490.215718 C = 4657.523008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.079 3.921 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.206 3.794 10 H 0.062 0.938 11 N -0.849 5.849 12 C 0.002 3.998 13 C 0.097 3.903 14 N -0.408 5.408 15 C 0.019 3.981 16 C 0.546 3.454 17 O -0.506 6.506 18 O -0.492 6.492 19 C 0.121 3.879 20 F -0.113 7.113 21 C -0.130 4.130 22 H 0.270 0.730 23 H 0.325 0.675 24 H 0.334 0.666 25 H 0.172 0.828 26 H 0.409 0.591 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -6.078 1.408 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.214 1.214 7 C -0.597 4.597 8 H 0.097 0.903 9 C 0.096 3.904 10 H 0.080 0.920 11 N -0.383 5.383 12 C -0.001 4.001 13 C -0.065 4.065 14 N -0.118 5.118 15 C -0.117 4.117 16 C 0.389 3.611 17 O -0.394 6.394 18 O -0.302 6.302 19 C 0.099 3.901 20 F -0.091 7.091 21 C -0.156 4.156 22 H 0.081 0.919 23 H 0.141 0.859 24 H 0.147 0.853 25 H 0.189 0.811 26 H 0.267 0.733 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.426 -6.439 1.574 11.523 hybrid contribution -0.597 0.870 -0.825 1.339 sum 8.829 -5.569 0.749 10.465 Atomic orbital electron populations 1.69871 1.06250 1.27660 1.47696 1.24999 0.94874 0.99074 0.93677 0.87013 0.80375 0.83661 0.78898 1.19780 1.18237 1.21421 1.21458 0.88600 0.95413 1.54241 0.90255 1.18580 0.94263 0.85742 0.91814 0.92017 1.59728 1.66844 1.06145 1.05625 1.21371 0.88198 0.98619 0.91925 1.22735 0.96428 0.88318 0.99043 1.67676 1.06260 1.10744 1.27155 1.19805 1.08862 0.93320 0.89726 1.20301 0.74330 0.85712 0.80748 1.90935 1.44614 1.67742 1.36102 1.84695 1.78919 1.31999 1.34561 1.18530 0.97551 0.91747 0.82309 1.91579 1.86530 1.82370 1.48616 1.21551 1.00287 0.92612 1.01147 0.91945 0.85854 0.85312 0.81095 0.73313 0.82598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.44 13.96 55.43 0.77 -23.67 15 2 C 0.08 2.03 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 18.82 24.61 -169.99 -4.18 14.64 15 4 H -0.27 -5.60 7.01 56.52 0.40 -5.20 15 5 H -0.26 -5.33 6.54 56.52 0.37 -4.96 15 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.56 -13.75 9.29 -34.44 -0.32 -14.07 15 8 H 0.08 2.18 7.98 -52.49 -0.42 1.76 15 9 C 0.21 4.21 2.49 -70.01 -0.17 4.04 15 10 H 0.06 1.28 7.09 -51.93 -0.37 0.91 15 11 N -0.85 -16.03 8.98 -6.65 -0.06 -16.09 15 12 C 0.00 0.03 4.91 -104.37 -0.51 -0.48 15 13 C 0.10 1.70 10.46 -17.56 -0.18 1.52 15 14 N -0.41 -7.18 10.12 -9.77 -0.10 -7.28 15 15 C 0.02 0.32 6.75 -82.97 -0.56 -0.24 15 16 C 0.55 8.73 8.32 34.68 0.29 9.02 15 17 O -0.51 -8.90 16.10 -19.23 -0.31 -9.21 15 18 O -0.49 -6.24 13.24 -40.49 -0.54 -6.77 15 19 C 0.12 2.09 7.32 -38.80 -0.28 1.81 15 20 F -0.11 -1.96 15.55 2.25 0.04 -1.92 15 21 C -0.13 -2.21 9.80 -39.24 -0.38 -2.59 15 22 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 23 H 0.32 6.33 4.30 -39.29 -0.17 6.16 15 24 H 0.33 5.82 7.35 -39.29 -0.29 5.53 15 25 H 0.17 2.70 6.66 -52.49 -0.35 2.35 15 26 H 0.41 2.85 9.11 45.56 0.42 3.26 15 27 H 0.16 2.35 8.06 -52.48 -0.42 1.92 15 LS Contribution 246.88 15.07 3.72 3.72 Total: -1.00 -29.53 246.88 -3.66 -33.19 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -0.77 Total: 12.47 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.23 Total: 0.93 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.62 Total: -47.04 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.85 Total: -15.99 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.18 Total: 14.64 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.53 -3.66 -33.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.364 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds