Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 11 11 N 1.46902 * 109.47448 * 60.00146 * 9 7 2 12 12 C 1.50707 * 109.46656 * 179.97438 * 9 7 2 13 13 C 1.38711 * 120.30144 * 279.72342 * 12 9 7 14 14 N 1.31404 * 120.98652 * 179.72447 * 13 12 9 15 15 C 1.32848 * 121.66292 * 0.58849 * 14 13 12 16 16 C 1.47890 * 119.75725 * 179.70146 * 15 14 13 17 17 O 1.21448 * 120.00284 * 179.97438 * 16 15 14 18 18 O 1.34699 * 119.99689 * 359.97410 * 16 15 14 19 19 C 1.39602 * 120.49041 * 359.67859 * 15 14 13 20 20 F 1.35094 * 120.50935 * 180.02562 * 19 15 14 21 21 C 1.38438 * 120.29668 * 100.00315 * 12 9 7 22 22 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99614 * 296.04899 * 11 9 7 24 24 H 1.00906 * 111.00208 * 59.99391 * 11 9 7 25 25 H 1.08001 * 119.50097 * 0.02562 * 13 12 9 26 26 H 0.96700 * 116.99683 * 179.97438 * 18 16 15 27 27 H 1.08007 * 120.76711 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8746 -0.6800 -0.8911 11 7 4.0017 -0.5017 1.1983 12 6 4.0140 -2.6148 -0.0010 13 6 4.0570 -3.3418 1.1796 14 7 4.4875 -4.5832 1.1942 15 6 4.9082 -5.1885 0.0891 16 6 5.3903 -6.5851 0.1552 17 8 5.7755 -7.1429 -0.8525 18 8 5.4021 -7.2384 1.3331 19 6 4.8983 -4.5163 -1.1344 20 9 5.3256 -5.1316 -2.2586 21 6 4.4421 -3.2043 -1.1782 22 1 -0.4849 0.8401 -0.0004 23 1 3.7322 0.4706 1.1901 24 1 3.6785 -0.9594 2.0375 25 1 3.7273 -2.8821 2.0995 26 1 5.7255 -8.1497 1.3263 27 1 4.4219 -2.6572 -2.1092 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238597015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -116.172669 kcal Electronic energy + Delta-G solvation = -16605.755559 eV Core-core repulsion = 13470.370182 eV Total energy + Delta-G solvation = -3135.385377 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.19576 -41.76587 -40.66538 -37.24708 -37.18324 -34.24807 -33.27440 -31.86487 -28.45566 -26.65631 -24.96754 -23.66964 -22.10289 -19.66547 -19.18696 -18.82692 -18.29400 -17.92806 -17.40279 -17.19247 -16.40976 -16.35259 -15.76510 -15.24457 -14.73075 -14.56454 -14.35880 -14.25274 -13.68604 -13.65328 -12.96002 -12.78274 -12.66254 -12.26224 -12.03394 -11.71601 -10.95268 -10.90183 -10.81542 -10.15562 -9.46371 -8.40286 -6.52367 -0.75534 -0.10398 1.22781 1.29995 1.38853 1.46471 1.70685 2.22745 2.50540 2.73630 2.94546 3.06308 3.39975 3.81188 3.86710 4.05112 4.22174 4.40876 4.55731 4.82751 5.21076 5.28860 5.35919 5.38384 5.96745 6.26969 6.45080 6.52047 6.67052 6.89790 7.15433 8.75116 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043528 B = 0.006234 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.116744 B = 4490.215718 C = 4657.523008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.252 1.252 5 H -0.239 1.239 6 H -0.297 1.297 7 C -0.555 4.555 8 H 0.037 0.963 9 C 0.215 3.785 10 H 0.065 0.935 11 N -0.838 5.838 12 C -0.017 4.017 13 C 0.098 3.902 14 N -0.413 5.413 15 C 0.014 3.986 16 C 0.553 3.447 17 O -0.525 6.525 18 O -0.484 6.484 19 C 0.115 3.885 20 F -0.114 7.114 21 C -0.122 4.122 22 H 0.270 0.730 23 H 0.324 0.676 24 H 0.343 0.657 25 H 0.185 0.815 26 H 0.435 0.565 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.564 -5.854 1.857 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.177 1.177 5 H -0.162 1.162 6 H -0.225 1.225 7 C -0.594 4.594 8 H 0.055 0.945 9 C 0.104 3.896 10 H 0.083 0.917 11 N -0.372 5.372 12 C -0.020 4.020 13 C -0.064 4.064 14 N -0.123 5.123 15 C -0.122 4.122 16 C 0.396 3.604 17 O -0.415 6.415 18 O -0.297 6.297 19 C 0.093 3.907 20 F -0.092 7.092 21 C -0.148 4.148 22 H 0.080 0.920 23 H 0.141 0.859 24 H 0.157 0.843 25 H 0.202 0.798 26 H 0.297 0.703 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.167 -6.255 2.057 12.964 hybrid contribution -1.138 0.635 -0.931 1.602 sum 10.029 -5.619 1.126 11.551 Atomic orbital electron populations 1.70029 1.08335 1.28613 1.50107 1.25847 0.95466 1.02979 0.93314 0.85998 0.79438 0.78585 0.79985 1.17721 1.16235 1.22465 1.21661 0.91033 0.93655 1.53055 0.94475 1.18368 0.91334 0.87324 0.92574 0.91693 1.59670 1.66161 1.05984 1.05429 1.21236 0.89915 0.97918 0.92905 1.22941 0.95779 0.88326 0.99335 1.67739 1.06674 1.10691 1.27220 1.20164 1.08107 0.94207 0.89754 1.20052 0.73901 0.85292 0.81196 1.90933 1.45554 1.68048 1.36950 1.84635 1.78438 1.33935 1.32704 1.18549 0.97923 0.91870 0.82385 1.91577 1.86587 1.82393 1.48633 1.21734 0.98999 0.92595 1.01477 0.92029 0.85943 0.84320 0.79828 0.70274 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.98 13.96 21.45 0.30 -52.68 15 2 C 0.02 1.26 5.47 84.65 0.46 1.72 15 3 Si 0.94 37.86 24.61 68.60 1.69 39.55 15 4 H -0.25 -9.38 7.01 99.48 0.70 -8.68 15 5 H -0.24 -8.87 6.54 99.48 0.65 -8.22 15 6 H -0.30 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.55 -27.42 9.29 25.60 0.24 -27.19 15 8 H 0.04 2.10 7.98 -2.91 -0.02 2.08 15 9 C 0.21 8.44 2.49 43.42 0.11 8.55 15 10 H 0.07 2.54 7.09 -2.39 -0.02 2.52 15 11 N -0.84 -29.55 8.98 -174.95 -1.57 -31.12 15 12 C -0.02 -0.60 4.91 -19.70 -0.10 -0.69 15 13 C 0.10 3.30 10.46 84.87 0.89 4.19 15 14 N -0.41 -13.89 10.12 -184.82 -1.87 -15.76 15 15 C 0.01 0.45 6.75 41.88 0.28 0.74 15 16 C 0.55 16.66 8.32 70.38 0.59 17.24 15 17 O -0.53 -17.65 16.10 20.00 0.32 -17.32 15 18 O -0.48 -11.08 13.24 -56.09 -0.74 -11.82 15 19 C 0.12 3.82 7.32 22.78 0.17 3.98 15 20 F -0.11 -3.80 15.55 44.97 0.70 -3.11 15 21 C -0.12 -3.97 9.80 22.49 0.22 -3.75 15 22 H 0.27 14.42 8.31 -92.71 -0.77 13.65 15 23 H 0.32 11.60 4.30 -89.69 -0.39 11.21 15 24 H 0.34 11.18 7.35 -89.69 -0.66 10.52 15 25 H 0.18 5.52 6.66 -2.91 -0.02 5.50 15 26 H 0.43 4.80 9.11 -74.06 -0.67 4.12 15 27 H 0.17 4.91 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -62.84 246.88 1.16 -61.68 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.52 Total: 25.81 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 2.86 Total: 4.79 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -3.14 Total: -99.57 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.42 Total: -29.15 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.70 Total: -3.11 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.69 Total: 39.55 kcal Total: -62.84 1.16 -61.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.493 kcal (2) G-P(sol) polarization free energy of solvation -62.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds