Wall clock time and date at job start Mon Mar 30 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35770 * 116.99673 * 2 1 4 4 C 1.41392 * 120.13143 * 90.00240 * 3 2 1 5 5 C 1.40996 * 120.21034 * 359.95347 * 4 3 2 6 6 H 1.08001 * 119.99780 * 24.90155 * 5 4 3 7 7 C 1.39830 * 120.00274 * 204.90384 * 5 4 3 8 8 N 1.30941 * 120.00201 * 17.76720 * 7 5 4 9 9 Si 1.86801 * 120.00251 * 197.76523 * 7 5 4 10 10 H 1.48500 * 109.46993 * 89.99823 * 9 7 5 11 11 H 1.48497 * 109.47703 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00065 * 9 7 5 13 13 C 1.40791 * 119.58519 * 179.97438 * 4 3 2 14 14 C 1.37682 * 119.93655 * 0.27356 * 13 4 3 15 15 C 1.40103 * 120.20727 * 359.46334 * 14 13 4 16 16 C 1.38244 * 120.12376 * 269.97135 * 3 2 1 17 17 F 1.35092 * 119.88249 * 0.03455 * 16 3 2 18 18 O 1.36407 * 108.48218 * 180.31457 * 15 14 13 19 19 C 1.44270 * 105.44601 * 342.23703 * 18 15 14 20 20 O 1.36587 * 131.30339 * 179.69988 * 14 13 4 21 21 H 1.08992 * 109.46816 * 60.00217 * 1 2 3 22 22 H 1.08997 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47105 * 300.00171 * 1 2 3 24 24 H 0.97005 * 120.00767 * 179.97438 * 8 7 5 25 25 H 1.08002 * 120.03254 * 179.97438 * 13 4 3 26 26 H 1.08998 * 110.97422 * 269.13665 * 19 18 15 27 27 H 1.09001 * 110.28457 * 146.21997 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3676 1.8422 1.2229 5 6 2.0501 1.2209 2.4481 6 1 1.9443 0.1473 2.4977 7 6 1.8721 1.9949 3.5990 8 7 1.6531 3.2817 3.4953 9 14 1.9466 1.1931 5.2846 10 1 3.3449 1.2194 5.7838 11 1 1.0710 1.9366 6.2257 12 1 1.4832 -0.2142 5.1842 13 6 3.0072 3.0963 1.2094 14 6 3.3092 3.7008 0.0098 15 6 2.9923 3.0666 -1.1986 16 6 2.3608 1.8277 -1.1957 17 9 2.0542 1.2260 -2.3657 18 8 3.3996 3.8658 -2.2262 19 6 3.5839 5.1737 -1.6460 20 8 3.9105 4.8943 -0.2721 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.5293 3.8186 4.2937 25 1 3.2562 3.5861 2.1393 26 1 2.6680 5.7613 -1.7096 27 1 4.4072 5.6924 -2.1371 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258066735.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:30 Heat of formation + Delta-G solvation = -126.905295 kcal Electronic energy + Delta-G solvation = -17299.140659 eV Core-core repulsion = 14130.997129 eV Total energy + Delta-G solvation = -3168.143530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.063 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.86869 -40.91369 -38.02615 -35.52686 -35.18542 -33.47558 -29.44553 -28.49864 -26.22400 -25.83476 -24.17702 -21.65210 -21.39083 -18.25557 -17.40402 -16.95520 -16.50895 -15.85655 -15.40134 -14.96039 -14.70847 -14.46484 -13.99113 -13.72712 -13.35212 -13.23134 -12.75739 -12.06787 -11.98035 -11.60819 -11.51852 -11.31876 -11.04556 -10.80235 -10.48532 -10.27891 -9.80247 -9.11265 -8.94266 -7.48854 -7.24899 -6.98771 -4.66938 2.23609 2.35662 2.92267 2.96953 2.98411 3.61115 3.72490 4.21801 4.31790 4.83770 5.20485 5.29537 5.34545 5.53854 6.01107 6.06558 6.14467 6.23309 6.35492 6.55813 6.74461 6.79992 7.03002 7.20908 7.44252 7.62300 7.96917 8.17188 8.33588 8.46345 8.78951 9.81077 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.024266 B = 0.010313 C = 0.007559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.585725 B = 2714.329910 C = 3703.515090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.311 6.311 3 C -0.068 4.068 4 C 0.130 3.870 5 C -0.423 4.423 6 H 0.097 0.903 7 C 0.071 3.929 8 N -0.774 5.774 9 Si 0.920 3.080 10 H -0.263 1.263 11 H -0.275 1.275 12 H -0.257 1.257 13 C -0.149 4.149 14 C 0.077 3.923 15 C -0.143 4.143 16 C 0.143 3.857 17 F -0.150 7.150 18 O -0.316 6.316 19 C 0.216 3.784 20 O -0.319 6.319 21 H 0.029 0.971 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.289 0.711 25 H 0.139 0.861 26 H 0.068 0.932 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 1.036 -0.959 1.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.227 6.227 3 C -0.114 4.114 4 C 0.126 3.874 5 C -0.450 4.450 6 H 0.115 0.885 7 C -0.150 4.150 8 N -0.397 5.397 9 Si 0.743 3.257 10 H -0.188 1.188 11 H -0.200 1.200 12 H -0.181 1.181 13 C -0.169 4.169 14 C 0.033 3.967 15 C -0.187 4.187 16 C 0.122 3.878 17 F -0.128 7.128 18 O -0.234 6.234 19 C 0.103 3.897 20 O -0.236 6.236 21 H 0.048 0.952 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.157 0.843 26 H 0.085 0.915 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.572 1.154 -0.956 1.604 hybrid contribution -0.293 0.206 0.319 0.480 sum -0.865 1.360 -0.637 1.733 Atomic orbital electron populations 1.22867 0.82413 1.01113 0.99976 1.86040 1.18073 1.24607 1.93974 1.17953 1.10984 0.92789 0.89654 1.17281 0.89009 0.89441 0.91662 1.19563 1.38439 0.96012 0.90961 0.88495 1.26127 0.91811 0.94674 1.02395 1.69851 1.30154 1.06860 1.32825 0.86093 0.79549 0.80516 0.79519 1.18771 1.20008 1.18082 1.20227 1.04481 0.98147 0.94040 1.19496 0.97076 0.85862 0.94300 1.18873 1.16704 0.97220 0.85879 1.16739 1.00725 0.89547 0.80754 1.91349 1.91420 1.83278 1.46785 1.87213 1.85239 1.19237 1.31682 1.25268 1.00321 0.86402 0.77664 1.87247 1.70402 1.37083 1.28865 0.95230 0.90569 0.93448 0.89979 0.84329 0.91487 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.13 101.05 1.12 1.73 15 2 O -0.31 -7.34 9.55 -19.02 -0.18 -7.52 15 3 C -0.07 -1.70 5.75 -38.38 -0.22 -1.92 15 4 C 0.13 3.33 5.58 -106.69 -0.60 2.73 15 5 C -0.42 -10.35 8.70 -37.94 -0.33 -10.68 15 6 H 0.10 2.33 7.64 -52.49 -0.40 1.93 15 7 C 0.07 1.62 5.13 -17.34 -0.09 1.53 15 8 N -0.77 -18.15 10.97 55.54 0.61 -17.54 15 9 Si 0.92 17.01 29.60 -169.99 -5.03 11.98 15 10 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 11 H -0.28 -4.96 7.11 56.52 0.40 -4.56 15 12 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 13 C -0.15 -3.77 8.68 -38.82 -0.34 -4.10 15 14 C 0.08 1.88 7.12 -39.09 -0.28 1.60 15 15 C -0.14 -3.51 7.14 -38.58 -0.28 -3.79 15 16 C 0.14 3.58 7.30 -39.28 -0.29 3.29 15 17 F -0.15 -3.63 17.09 2.25 0.04 -3.59 15 18 O -0.32 -7.06 11.41 -45.38 -0.52 -7.57 15 19 C 0.22 3.90 8.88 101.05 0.90 4.79 15 20 O -0.32 -6.99 11.41 -45.96 -0.52 -7.52 15 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 24 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 25 H 0.14 3.53 6.17 -52.49 -0.32 3.21 15 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.11 1.55 8.14 -51.93 -0.42 1.13 15 LS Contribution 249.59 15.07 3.76 3.76 Total: -1.00 -27.83 249.59 -4.21 -32.04 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -1.97 Total: 0.78 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.39 Total: -4.82 kcal Atomic # 7 Polarization: -18.15 SS G_CDS: 0.61 Total: -17.54 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.22 Total: -22.61 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.83 -4.21 -32.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258066735.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.867 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds