Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37638 * 119.87852 * 2 1 4 4 C 1.40702 * 119.74424 * 180.27185 * 3 2 1 5 5 C 1.41390 * 120.24616 * 179.70637 * 4 3 2 6 6 H 1.07999 * 120.00405 * 204.39854 * 5 4 3 7 7 C 1.39944 * 119.99952 * 24.39533 * 5 4 3 8 8 N 1.30828 * 120.00328 * 17.85507 * 7 5 4 9 9 Si 1.86803 * 120.00077 * 197.85739 * 7 5 4 10 10 H 1.48501 * 109.46979 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46946 * 119.99817 * 9 7 5 12 12 H 1.48498 * 109.47367 * 239.99924 * 9 7 5 13 13 C 1.40738 * 119.50972 * 359.72065 * 4 3 2 14 14 C 1.37600 * 119.74663 * 0.02562 * 13 4 3 15 15 C 1.38620 * 119.87325 * 179.72227 * 2 1 3 16 16 S 1.76197 * 119.74939 * 0.02562 * 15 2 1 17 17 C 1.81402 * 104.45039 * 294.72767 * 16 15 2 18 18 O 1.42101 * 104.27479 * 178.65302 * 16 15 2 19 19 O 1.42105 * 104.27620 * 50.80132 * 16 15 2 20 20 H 1.08999 * 109.47338 * 270.27677 * 1 2 3 21 21 H 1.09003 * 109.47134 * 30.27757 * 1 2 3 22 22 H 1.09004 * 109.47358 * 150.27460 * 1 2 3 23 23 H 1.07993 * 120.12756 * 359.97438 * 3 2 1 24 24 H 0.97000 * 120.00292 * 180.02562 * 8 7 5 25 25 H 1.08000 * 120.12396 * 179.97438 * 13 4 3 26 26 H 1.08001 * 119.87203 * 179.97438 * 14 13 4 27 27 H 1.08997 * 109.47010 * 300.00271 * 17 16 15 28 28 H 1.09006 * 109.46866 * 60.00093 * 17 16 15 29 29 H 1.08996 * 109.46796 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1934 0.0000 4 6 3.5996 1.1902 -0.0058 5 6 4.3147 2.4099 -0.0121 6 1 5.3210 2.4440 -0.4027 7 6 3.7184 3.5731 0.4877 8 7 2.6697 3.4885 1.2654 9 14 4.4198 5.2468 0.0445 10 1 5.5976 5.0708 -0.8426 11 1 3.3853 6.0463 -0.6598 12 1 4.8336 5.9539 1.2830 13 6 4.2900 -0.0363 -0.0056 14 6 3.5839 -1.2172 -0.0002 15 6 2.1974 -1.2020 0.0058 16 16 1.3064 -2.7221 0.0125 17 6 0.4429 -2.7336 1.6078 18 8 2.3170 -3.7207 -0.0149 19 8 0.3787 -2.5892 -1.0557 20 1 -0.3634 0.0050 1.0276 21 1 -0.3633 0.8875 -0.5181 22 1 -0.3634 -0.8925 -0.5096 23 1 1.6528 2.1287 -0.0004 24 1 2.2562 4.2948 1.6115 25 1 5.3699 -0.0504 -0.0104 26 1 4.1116 -2.1595 -0.0004 27 1 1.1725 -2.6860 2.4162 28 1 -0.2220 -1.8719 1.6673 29 1 -0.1409 -3.6496 1.6982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258157408.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = -62.941534 kcal Electronic energy + Delta-G solvation = -15129.383889 eV Core-core repulsion = 12530.227212 eV Total energy + Delta-G solvation = -2599.156677 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.84160 -36.43931 -35.22944 -34.16945 -31.81672 -29.87211 -29.01052 -26.02537 -25.65763 -21.55055 -20.19705 -18.23444 -17.38796 -16.45168 -15.67259 -15.43583 -15.21739 -13.97800 -13.69018 -13.43904 -13.18009 -12.87453 -12.50706 -12.32960 -11.98709 -11.75191 -11.57245 -11.44638 -11.24667 -11.14459 -10.85384 -10.71287 -10.42902 -10.27812 -9.73932 -9.46564 -9.29347 -7.88508 -7.51384 -7.11711 -4.77028 0.88573 2.27836 2.88145 2.91650 2.92529 2.96538 3.67895 3.82347 4.17679 4.54990 4.80339 5.16572 5.36661 5.53949 5.85040 5.94254 5.98613 6.19983 6.29398 6.60697 6.66977 6.73947 6.98536 7.14114 7.37491 7.47793 7.67464 7.81388 8.00972 8.34056 8.54465 8.68363 9.79055 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.047619 B = 0.006996 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.863470 B = 4001.061442 C = 4313.733880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 C -0.180 4.180 4 C 0.138 3.862 5 C -0.436 4.436 6 H 0.087 0.913 7 C 0.073 3.927 8 N -0.769 5.769 9 Si 0.916 3.084 10 H -0.256 1.256 11 H -0.268 1.268 12 H -0.271 1.271 13 C -0.242 4.242 14 C 0.001 3.999 15 C -0.767 4.767 16 S 2.504 3.496 17 C -0.662 4.662 18 O -0.969 6.969 19 O -0.959 6.959 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.090 0.910 23 H 0.123 0.877 24 H 0.287 0.713 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 -2.560 1.955 4.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 C -0.200 4.200 4 C 0.135 3.865 5 C -0.464 4.464 6 H 0.105 0.895 7 C -0.149 4.149 8 N -0.391 5.391 9 Si 0.739 3.261 10 H -0.180 1.180 11 H -0.193 1.193 12 H -0.196 1.196 13 C -0.262 4.262 14 C -0.019 4.019 15 C -0.862 4.862 16 S 2.691 3.309 17 C -0.810 4.810 18 O -0.966 6.966 19 O -0.957 6.957 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.108 0.892 23 H 0.141 0.859 24 H 0.098 0.902 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.649 -3.095 1.481 5.008 hybrid contribution 0.351 1.593 0.660 1.760 sum -3.297 -1.501 2.141 4.209 Atomic orbital electron populations 1.21487 0.93634 1.04927 1.01672 1.18954 0.93265 0.92657 0.94285 1.21218 0.94231 0.96122 1.08422 1.17850 0.92305 0.92220 0.84133 1.19951 1.01341 0.92142 1.32944 0.89450 1.26119 0.94111 1.02239 0.92410 1.69828 1.17049 1.32133 1.20112 0.86125 0.80318 0.80073 0.79599 1.17979 1.19269 1.19575 1.21061 0.97939 0.92396 1.14824 1.20247 0.91737 0.97581 0.92320 1.28602 1.04851 1.14668 1.38082 1.04325 0.74878 0.75311 0.76432 1.30395 1.14946 1.10406 1.25231 1.93449 1.56884 1.59276 1.86979 1.93448 1.65310 1.86876 1.50034 0.91877 0.91249 0.89206 0.85947 0.90155 0.88218 0.87083 0.85545 0.85437 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.45 36.00 0.30 -2.67 15 2 C 0.01 0.23 5.86 -104.70 -0.61 -0.38 15 3 C -0.18 -4.47 8.34 -38.87 -0.32 -4.79 15 4 C 0.14 3.54 5.58 -106.82 -0.60 2.94 15 5 C -0.44 -10.79 9.05 -37.74 -0.34 -11.14 15 6 H 0.09 2.06 7.91 -52.49 -0.41 1.64 15 7 C 0.07 1.68 5.14 -17.34 -0.09 1.59 15 8 N -0.77 -18.21 10.95 55.55 0.61 -17.60 15 9 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 15 10 H -0.26 -4.77 7.11 56.52 0.40 -4.36 15 11 H -0.27 -4.94 7.11 56.52 0.40 -4.53 15 12 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 13 C -0.24 -5.80 9.80 -38.87 -0.38 -6.18 15 14 C 0.00 0.02 9.47 -39.66 -0.38 -0.35 15 15 C -0.77 -16.71 5.60 -39.29 -0.22 -16.93 15 16 S 2.50 45.31 5.20 -107.50 -0.56 44.75 15 17 C -0.66 -8.81 10.59 101.05 1.07 -7.74 15 18 O -0.97 -19.74 16.71 -57.54 -0.96 -20.70 15 19 O -0.96 -19.36 15.31 -57.54 -0.88 -20.24 15 20 H 0.06 1.00 7.09 -51.93 -0.37 0.63 15 21 H 0.07 1.23 8.08 -51.93 -0.42 0.81 15 22 H 0.09 1.61 4.84 -51.93 -0.25 1.35 15 23 H 0.12 3.08 6.16 -52.49 -0.32 2.75 15 24 H 0.29 6.07 8.30 -40.82 -0.34 5.74 15 25 H 0.10 2.21 8.06 -52.49 -0.42 1.78 15 26 H 0.11 2.32 7.19 -52.49 -0.38 1.94 15 27 H 0.13 1.56 8.14 -51.93 -0.42 1.14 15 28 H 0.13 1.59 6.00 -51.92 -0.31 1.28 15 29 H 0.11 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 256.88 15.07 3.87 3.87 Total: -1.00 -29.70 256.88 -7.39 -37.09 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -2.87 Total: 6.41 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: -1.57 Total: -45.65 kcal Atomic # 7 Polarization: -18.21 SS G_CDS: 0.61 Total: -17.60 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.84 Total: -40.94 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 45.31 SS G_CDS: -0.56 Total: 44.75 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.70 -7.39 -37.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258157408.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.856 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds