Wall clock time and date at job start Mon Mar 30 2020 03:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38657 * 119.74826 * 2 1 4 4 C 1.37598 * 120.24978 * 179.97438 * 3 2 1 5 5 C 1.40731 * 119.74687 * 359.97438 * 4 3 2 6 6 C 1.41392 * 120.25012 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00310 * 204.38754 * 6 5 4 8 8 C 1.39954 * 119.99399 * 24.38463 * 6 5 4 9 9 N 1.30816 * 120.00002 * 17.85644 * 8 6 5 10 10 Si 1.86794 * 119.99589 * 197.85441 * 8 6 5 11 11 H 1.48503 * 109.47130 * 60.00162 * 10 8 6 12 12 H 1.48501 * 109.47134 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47541 * 300.00136 * 10 8 6 14 14 C 1.40707 * 119.50701 * 359.70919 * 5 4 3 15 15 C 1.37634 * 119.74479 * 0.55808 * 14 5 4 16 16 S 1.76195 * 119.87556 * 179.73200 * 15 14 5 17 17 C 1.81407 * 104.44988 * 114.72889 * 16 15 14 18 18 O 1.42094 * 104.27967 * 358.65985 * 16 15 14 19 19 O 1.42099 * 104.28014 * 230.80251 * 16 15 14 20 20 H 1.09002 * 109.47620 * 270.02621 * 1 2 3 21 21 H 1.09000 * 109.47168 * 30.03261 * 1 2 3 22 22 H 1.09000 * 109.47102 * 150.02854 * 1 2 3 23 23 H 1.08002 * 119.87822 * 0.02562 * 3 2 1 24 24 H 1.08001 * 120.12681 * 180.02562 * 4 3 2 25 25 H 0.97004 * 120.00075 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.12717 * 180.31714 * 14 5 4 27 27 H 1.08997 * 109.46728 * 308.37901 * 17 16 15 28 28 H 1.08999 * 109.47089 * 188.37716 * 17 16 15 29 29 H 1.09007 * 109.46835 * 68.37442 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2038 0.0000 4 6 3.5709 1.2159 0.0005 5 6 4.2798 0.0002 0.0016 6 6 5.6937 0.0001 0.0027 7 1 6.2340 -0.8518 -0.3826 8 6 6.3930 1.1043 0.5032 9 7 5.7855 1.9682 1.2752 10 14 8.1938 1.3444 0.0689 11 1 8.3356 1.4676 -1.4042 12 1 8.6995 2.5799 0.7193 13 1 8.9780 0.1770 0.5456 14 6 3.5711 -1.2153 0.0084 15 6 2.1948 -1.2034 0.0022 16 16 1.3039 -2.7235 0.0035 17 6 0.4339 -2.7370 1.5952 18 8 2.3145 -3.7221 -0.0208 19 8 0.3806 -2.5895 -1.0683 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8897 -0.5143 22 1 -0.3633 -0.8902 -0.5134 23 1 1.6489 2.1356 0.0004 24 1 4.1048 2.1547 0.0009 25 1 6.2701 2.7337 1.6218 26 1 4.1050 -2.1541 0.0144 27 1 1.1438 -2.5413 2.3989 28 1 -0.0285 -3.7121 1.7483 29 1 -0.3362 -1.9655 1.5949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258161772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:16 Heat of formation + Delta-G solvation = -78.447993 kcal Electronic energy + Delta-G solvation = -15117.596737 eV Core-core repulsion = 12517.767649 eV Total energy + Delta-G solvation = -2599.829088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.66205 -38.09541 -36.87433 -35.92011 -33.11793 -31.63644 -30.26527 -29.15653 -25.74908 -23.55450 -22.14516 -20.20086 -19.25706 -17.51551 -17.09937 -17.01377 -16.68934 -16.04003 -15.43521 -15.02270 -14.73233 -14.22836 -13.98837 -13.78202 -13.55819 -13.25013 -13.10875 -12.92709 -12.89122 -12.71840 -12.55246 -12.32042 -12.06094 -11.79674 -11.52464 -11.07971 -11.03736 -9.78208 -9.36126 -8.71373 -6.40854 -0.66810 0.48639 0.86073 1.35775 1.45346 1.48729 2.09819 2.17569 2.54155 3.03676 3.37349 3.57134 4.15353 4.20440 4.30273 4.34762 4.62006 4.84605 4.89821 4.97317 5.04301 5.07673 5.22763 5.31996 5.47191 5.66440 5.92356 6.00582 6.16463 6.55656 6.81829 6.88054 8.26099 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.007448 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.452654 B = 3758.309599 C = 4200.116162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.126 4.126 4 C -0.142 4.142 5 C 0.055 3.945 6 C -0.504 4.504 7 H 0.074 0.926 8 C 0.038 3.962 9 N -0.824 5.824 10 Si 0.983 3.017 11 H -0.263 1.263 12 H -0.263 1.263 13 H -0.260 1.260 14 C -0.154 4.154 15 C -0.626 4.626 16 S 2.503 3.497 17 C -0.623 4.623 18 O -0.990 6.990 19 O -0.972 6.972 20 H 0.094 0.906 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.291 0.709 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.163 0.837 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -2.605 2.990 9.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.145 4.145 4 C -0.162 4.162 5 C 0.052 3.948 6 C -0.533 4.533 7 H 0.092 0.908 8 C -0.177 4.177 9 N -0.450 5.450 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.187 1.187 13 H -0.184 1.184 14 C -0.175 4.175 15 C -0.713 4.713 16 S 2.689 3.311 17 C -0.777 4.777 18 O -0.988 6.988 19 O -0.969 6.969 20 H 0.113 0.887 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.142 0.858 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.163 0.837 28 H 0.181 0.819 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.298 -3.009 2.455 9.162 hybrid contribution 1.365 1.028 0.310 1.737 sum -6.932 -1.981 2.765 7.722 Atomic orbital electron populations 1.21431 0.89565 1.05672 1.03929 1.19366 0.96067 0.91343 1.04993 1.21067 0.94003 0.97636 1.01826 1.21618 0.93874 0.98201 1.02482 1.18052 0.94243 0.91890 0.90608 1.19808 0.91823 1.03461 1.38245 0.90788 1.26708 1.05485 0.93861 0.91633 1.69805 1.40865 1.11546 1.22796 0.85245 0.75933 0.78914 0.79609 1.18713 1.18731 1.18437 1.20921 0.92649 0.97643 1.06242 1.29905 1.05088 1.18349 1.17985 1.04737 0.74451 0.72970 0.78953 1.30046 1.15008 1.14318 1.18368 1.93461 1.58767 1.58320 1.88215 1.93447 1.64462 1.86055 1.52922 0.88734 0.90234 0.89089 0.85803 0.87168 0.89811 0.87431 0.83745 0.81916 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.43 71.23 0.60 -3.75 15 2 C -0.12 -4.65 5.89 -19.68 -0.12 -4.76 15 3 C -0.13 -5.60 9.67 22.22 0.21 -5.38 15 4 C -0.14 -7.38 8.70 22.73 0.20 -7.18 15 5 C 0.06 3.03 5.58 -21.29 -0.12 2.92 15 6 C -0.50 -27.76 9.05 23.46 0.21 -27.55 15 7 H 0.07 3.99 7.91 -2.91 -0.02 3.97 15 8 C 0.04 1.92 5.14 85.26 0.44 2.36 15 9 N -0.82 -42.30 10.95 21.83 0.24 -42.06 15 10 Si 0.98 38.30 29.59 68.60 2.03 40.33 15 11 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 12 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 13 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 14 C -0.15 -7.83 9.24 22.73 0.21 -7.62 15 15 C -0.63 -26.76 5.57 22.22 0.12 -26.63 15 16 S 2.50 82.86 5.20 -56.49 -0.29 82.57 15 17 C -0.62 -11.85 10.50 113.37 1.19 -10.66 15 18 O -0.99 -40.09 16.72 -127.65 -2.13 -42.23 15 19 O -0.97 -35.36 15.33 -127.65 -1.96 -37.32 15 20 H 0.09 2.06 7.25 -2.39 -0.02 2.04 15 21 H 0.08 2.11 8.08 -2.39 -0.02 2.09 15 22 H 0.09 2.61 4.85 -2.39 -0.01 2.60 15 23 H 0.12 4.66 8.06 -2.91 -0.02 4.64 15 24 H 0.11 5.89 6.15 -2.91 -0.02 5.88 15 25 H 0.29 13.43 8.30 -92.71 -0.77 12.66 15 26 H 0.11 5.48 7.20 -2.91 -0.02 5.46 15 27 H 0.14 2.61 8.14 -2.39 -0.02 2.59 15 28 H 0.16 1.97 8.14 -2.39 -0.02 1.95 15 29 H 0.16 2.30 6.26 -2.39 -0.01 2.28 15 Total: -1.00 -70.26 257.23 2.00 -68.26 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.16 Total: 18.71 kcal Atomic # 6 Polarization: -91.21 SS G_CDS: 2.95 Total: -88.26 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.24 Total: -42.06 kcal Atomic # 8 Polarization: -75.46 SS G_CDS: -4.09 Total: -79.55 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: 82.86 SS G_CDS: -0.29 Total: 82.57 kcal Total: -70.26 2.00 -68.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258161772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.191 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds