Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48503 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47314 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47257 * 59.99913 * 3 2 1 7 7 C 1.37874 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00153 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.39275 * 60.78561 * 9 7 2 11 11 C 1.54174 * 110.34640 * 183.02591 * 9 7 2 12 12 O 1.44290 * 104.93835 * 118.86290 * 11 9 7 13 13 C 1.44404 * 104.60925 * 23.64562 * 12 11 9 14 14 H 1.08998 * 110.40839 * 79.44905 * 13 12 11 15 15 C 1.53002 * 110.40057 * 201.86741 * 13 12 11 16 16 C 1.50698 * 109.47281 * 290.22071 * 15 13 12 17 17 C 1.33384 * 125.20320 * 89.71828 * 16 15 13 18 18 C 1.38423 * 114.91913 * 179.85876 * 17 16 15 19 19 C 1.33392 * 114.92260 * 0.42884 * 18 17 16 20 20 S 1.75884 * 125.20022 * 270.02166 * 16 15 13 21 21 O 1.44288 * 110.34276 * 298.54503 * 9 7 2 22 22 H 0.97004 * 120.00308 * 359.97438 * 1 2 3 23 23 H 1.08992 * 110.34584 * 237.73177 * 11 9 7 24 24 H 1.08998 * 110.34735 * 359.97438 * 11 9 7 25 25 H 1.09001 * 109.47149 * 50.22235 * 15 13 12 26 26 H 1.09000 * 109.47255 * 170.21656 * 15 13 12 27 27 H 1.08000 * 122.54326 * 0.02562 * 17 16 15 28 28 H 1.08000 * 122.54037 * 180.20241 * 18 17 16 29 29 H 1.07996 * 125.20754 * 179.74630 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6297 -2.5790 -0.8915 11 6 2.2332 -3.6851 0.0775 12 8 1.8961 -4.3683 1.3028 13 6 0.5220 -4.0040 1.5568 14 1 -0.1497 -4.6003 0.9392 15 6 0.1875 -4.1849 3.0388 16 6 0.1590 -5.6544 3.3716 17 6 1.2074 -6.3707 3.7803 18 6 0.9401 -7.7057 4.0299 19 6 -0.3235 -8.0756 3.8154 20 16 -1.2600 -6.6889 3.2734 21 8 0.4400 -2.6101 1.1887 22 1 -0.4851 0.8401 0.0004 23 1 2.0947 -4.3479 -0.7766 24 1 3.2610 -3.3242 0.1149 25 1 0.9455 -3.6895 3.6455 26 1 -0.7884 -3.7462 3.2472 27 1 2.1898 -5.9410 3.9094 28 1 1.6979 -8.3964 4.3691 29 1 -0.7119 -9.0738 3.9530 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258475561.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = -61.420035 kcal Electronic energy + Delta-G solvation = -14851.439652 eV Core-core repulsion = 12252.348952 eV Total energy + Delta-G solvation = -2599.090700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.13789 -37.60801 -33.84253 -32.96595 -32.07388 -29.02368 -26.86515 -24.72369 -23.42980 -21.48893 -20.93735 -19.08917 -17.25375 -16.61035 -16.01368 -15.29675 -15.09117 -14.55813 -14.34112 -14.01789 -13.01698 -12.80534 -12.58514 -12.44074 -12.02893 -11.81864 -11.57017 -11.19508 -11.06072 -10.92003 -10.61210 -10.49983 -10.08854 -9.60505 -9.06778 -8.69414 -8.50837 -8.34470 -8.24627 -6.11735 -4.26197 1.14241 1.77284 2.14250 2.91673 3.25396 3.33364 3.37181 4.34373 4.58669 4.78575 5.11017 5.17942 5.38752 5.59866 5.62628 5.74025 5.84790 5.99950 6.13100 6.20867 6.29858 6.37207 6.48001 6.50953 6.68357 7.00327 7.30895 7.77273 8.04682 8.31579 8.82935 9.45423 10.95977 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.005561 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.789596 B = 5033.881241 C = 5219.110599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.179 3.821 10 H 0.040 0.960 11 C 0.023 3.977 12 O -0.391 6.391 13 C 0.223 3.777 14 H 0.051 0.949 15 C -0.044 4.044 16 C -0.153 4.153 17 C -0.134 4.134 18 C -0.130 4.130 19 C -0.226 4.226 20 S 0.084 5.916 21 O -0.354 6.354 22 H 0.263 0.737 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -12.383 5.913 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.124 3.876 10 H 0.058 0.942 11 C -0.054 4.054 12 O -0.313 6.313 13 C 0.126 3.874 14 H 0.068 0.932 15 C -0.083 4.083 16 C -0.270 4.270 17 C -0.164 4.164 18 C -0.160 4.160 19 C -0.361 4.361 20 S 0.347 5.653 21 O -0.275 6.275 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.367 -12.039 5.742 13.547 hybrid contribution 1.808 0.495 0.142 1.880 sum -0.559 -11.544 5.885 12.970 Atomic orbital electron populations 1.70039 1.06117 1.26824 1.46812 1.25092 0.94846 0.99555 0.93382 0.86471 0.80202 0.83190 0.77738 1.19492 1.20774 1.20709 1.21109 0.92789 0.89585 1.53946 0.91428 1.21131 0.87530 0.93634 0.85345 0.94232 1.24180 1.01927 0.93732 0.85511 1.89093 1.28945 1.70496 1.42717 1.24126 0.83899 0.85938 0.93436 0.93165 1.20139 1.03971 0.88492 0.95729 1.24398 0.95877 0.99824 1.06905 1.20161 0.99854 0.93433 1.02903 1.20168 0.96420 0.96297 1.03164 1.25519 0.97932 1.02305 1.10330 1.84254 1.13450 1.00685 1.66914 1.89603 1.70406 1.20859 1.46586 0.92746 0.93475 0.89507 0.88546 0.89058 0.84065 0.84597 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.34 12.93 55.43 0.72 -24.63 15 2 C 0.08 2.18 5.42 -17.82 -0.10 2.08 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.54 -14.97 8.82 -34.44 -0.30 -15.28 15 8 H 0.07 1.82 7.37 -52.48 -0.39 1.43 15 9 C 0.18 4.66 3.40 -27.27 -0.09 4.56 15 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 11 C 0.02 0.51 7.54 37.77 0.28 0.79 15 12 O -0.39 -8.54 11.36 -59.42 -0.68 -9.21 15 13 C 0.22 4.76 3.77 37.16 0.14 4.90 15 14 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 15 C -0.04 -0.79 5.85 -27.88 -0.16 -0.95 15 16 C -0.15 -2.41 5.66 -36.01 -0.20 -2.61 15 17 C -0.13 -1.97 10.05 -41.21 -0.41 -2.38 15 18 C -0.13 -1.62 10.18 -41.21 -0.42 -2.04 15 19 C -0.23 -2.69 11.23 29.04 0.33 -2.36 15 20 S 0.08 1.14 23.33 -107.50 -2.51 -1.36 15 21 O -0.35 -9.34 10.69 -59.42 -0.64 -9.97 15 22 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.09 1.84 7.43 -51.93 -0.39 1.46 15 25 H 0.10 1.74 8.14 -51.93 -0.42 1.32 15 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 15 27 H 0.14 2.03 8.06 -52.49 -0.42 1.61 15 28 H 0.14 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.16 1.45 8.06 -52.49 -0.42 1.02 15 LS Contribution 269.07 15.07 4.05 4.05 Total: -1.00 -30.55 269.07 -8.30 -38.85 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.29 Total: -0.57 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.94 Total: -13.29 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.72 Total: -24.63 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.31 Total: -19.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.55 -8.30 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258475561.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.568 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds