Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99745 * 2 1 4 4 H 1.48503 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47314 * 299.99941 * 3 2 1 6 6 H 1.48502 * 109.47257 * 59.99913 * 3 2 1 7 7 C 1.37874 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00153 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.39275 * 60.78561 * 9 7 2 11 11 C 1.54174 * 110.34640 * 183.02591 * 9 7 2 12 12 O 1.44290 * 104.93835 * 118.86290 * 11 9 7 13 13 C 1.44404 * 104.60925 * 23.64562 * 12 11 9 14 14 H 1.08998 * 110.40839 * 79.44905 * 13 12 11 15 15 C 1.53002 * 110.40057 * 201.86741 * 13 12 11 16 16 C 1.50698 * 109.47281 * 290.22071 * 15 13 12 17 17 C 1.33384 * 125.20320 * 89.71828 * 16 15 13 18 18 C 1.38423 * 114.91913 * 179.85876 * 17 16 15 19 19 C 1.33392 * 114.92260 * 0.42884 * 18 17 16 20 20 S 1.75884 * 125.20022 * 270.02166 * 16 15 13 21 21 O 1.44288 * 110.34276 * 298.54503 * 9 7 2 22 22 H 0.97004 * 120.00308 * 359.97438 * 1 2 3 23 23 H 1.08992 * 110.34584 * 237.73177 * 11 9 7 24 24 H 1.08998 * 110.34735 * 359.97438 * 11 9 7 25 25 H 1.09001 * 109.47149 * 50.22235 * 15 13 12 26 26 H 1.09000 * 109.47255 * 170.21656 * 15 13 12 27 27 H 1.08000 * 122.54326 * 0.02562 * 17 16 15 28 28 H 1.08000 * 122.54037 * 180.20241 * 18 17 16 29 29 H 1.07996 * 125.20754 * 179.74630 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6297 -2.5790 -0.8915 11 6 2.2332 -3.6851 0.0775 12 8 1.8961 -4.3683 1.3028 13 6 0.5220 -4.0040 1.5568 14 1 -0.1497 -4.6003 0.9392 15 6 0.1875 -4.1849 3.0388 16 6 0.1590 -5.6544 3.3716 17 6 1.2074 -6.3707 3.7803 18 6 0.9401 -7.7057 4.0299 19 6 -0.3235 -8.0756 3.8154 20 16 -1.2600 -6.6889 3.2734 21 8 0.4400 -2.6101 1.1887 22 1 -0.4851 0.8401 0.0004 23 1 2.0947 -4.3479 -0.7766 24 1 3.2610 -3.3242 0.1149 25 1 0.9455 -3.6895 3.6455 26 1 -0.7884 -3.7462 3.2472 27 1 2.1898 -5.9410 3.9094 28 1 1.6979 -8.3964 4.3691 29 1 -0.7119 -9.0738 3.9530 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258475561.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = -80.237110 kcal Electronic energy + Delta-G solvation = -14852.255621 eV Core-core repulsion = 12252.348952 eV Total energy + Delta-G solvation = -2599.906669 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92972 -38.71843 -35.75492 -34.78851 -33.70560 -30.80052 -28.23136 -26.69661 -24.66749 -23.14905 -22.71745 -20.18129 -19.10709 -17.95020 -17.77100 -16.89615 -16.60558 -16.37807 -16.05347 -15.73947 -14.46826 -14.28173 -14.09406 -13.71478 -13.38431 -13.33133 -13.28958 -12.92233 -12.79089 -12.46092 -12.38030 -12.02497 -11.66369 -11.49027 -10.89521 -10.72748 -10.35462 -9.54933 -9.38681 -8.23298 -6.45748 0.07470 0.70467 1.11213 1.40186 1.41696 1.54493 1.86554 2.37044 2.85415 3.00754 3.42034 3.83150 4.01473 4.17722 4.25223 4.30061 4.34828 4.47392 4.65278 4.74017 4.76918 4.88088 5.12107 5.25116 5.39398 5.44224 5.61382 5.63448 5.98599 6.36865 6.74402 7.30614 8.85486 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.005561 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.789596 B = 5033.881241 C = 5219.110599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.169 3.831 10 H 0.016 0.984 11 C 0.032 3.968 12 O -0.391 6.391 13 C 0.220 3.780 14 H 0.055 0.945 15 C -0.034 4.034 16 C -0.187 4.187 17 C -0.131 4.131 18 C -0.140 4.140 19 C -0.206 4.206 20 S 0.082 5.918 21 O -0.387 6.387 22 H 0.265 0.735 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.166 0.834 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -13.696 6.537 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.595 4.595 8 H 0.091 0.909 9 C 0.113 3.887 10 H 0.034 0.966 11 C -0.045 4.045 12 O -0.313 6.313 13 C 0.124 3.876 14 H 0.073 0.927 15 C -0.073 4.073 16 C -0.304 4.304 17 C -0.161 4.161 18 C -0.170 4.170 19 C -0.341 4.341 20 S 0.345 5.655 21 O -0.308 6.308 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.157 0.843 28 H 0.183 0.817 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.545 -13.368 6.364 14.886 hybrid contribution 1.520 0.774 -0.036 1.706 sum -0.025 -12.593 6.328 14.094 Atomic orbital electron populations 1.70168 1.07814 1.27849 1.47983 1.26011 0.95710 1.03417 0.92827 0.85354 0.79172 0.78333 0.77836 1.18366 1.19847 1.20619 1.21513 0.93295 0.90812 1.53925 0.90942 1.21089 0.88016 0.94940 0.84606 0.96618 1.24108 1.01096 0.92774 0.86532 1.89077 1.29179 1.70259 1.42754 1.24380 0.83712 0.83715 0.95745 0.92733 1.19951 1.03624 0.90640 0.93112 1.24190 0.97629 0.98925 1.09690 1.20391 0.99430 0.94565 1.01716 1.20409 0.97503 0.95642 1.03479 1.25968 0.97270 1.02877 1.07993 1.84254 1.12875 1.01284 1.67103 1.89529 1.70804 1.23931 1.46551 0.92606 0.90847 0.88804 0.89365 0.88991 0.84335 0.81691 0.78901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.14 12.93 21.45 0.28 -53.86 15 2 C 0.02 1.30 5.42 84.65 0.46 1.76 15 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.56 -31.49 8.82 25.60 0.23 -31.26 15 8 H 0.07 3.89 7.37 -2.91 -0.02 3.87 15 9 C 0.17 8.99 3.40 30.25 0.10 9.09 15 10 H 0.02 0.91 8.14 -2.38 -0.02 0.89 15 11 C 0.03 1.37 7.54 72.38 0.55 1.91 15 12 O -0.39 -16.93 11.36 -125.85 -1.43 -18.36 15 13 C 0.22 9.53 3.77 71.98 0.27 9.80 15 14 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 15 C -0.03 -1.23 5.85 29.85 0.17 -1.06 15 16 C -0.19 -5.77 5.66 24.59 0.14 -5.63 15 17 C -0.13 -3.63 10.05 21.21 0.21 -3.42 15 18 C -0.14 -3.07 10.18 21.22 0.22 -2.86 15 19 C -0.21 -4.20 11.23 66.72 0.75 -3.45 15 20 S 0.08 2.10 23.33 -56.49 -1.32 0.78 15 21 O -0.39 -20.98 10.69 -125.85 -1.34 -22.33 15 22 H 0.27 14.89 8.31 -92.71 -0.77 14.12 15 23 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 24 H 0.09 3.91 7.43 -2.39 -0.02 3.89 15 25 H 0.09 3.26 8.14 -2.39 -0.02 3.24 15 26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 15 27 H 0.14 3.84 8.06 -2.91 -0.02 3.81 15 28 H 0.17 2.62 8.06 -2.91 -0.02 2.60 15 29 H 0.19 2.58 8.06 -2.91 -0.02 2.56 15 Total: -1.00 -65.76 269.07 2.45 -63.31 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.14 Total: 9.97 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 3.10 Total: -25.11 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.28 Total: -53.86 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -2.77 Total: -40.69 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.32 Total: 0.78 kcal Total: -65.76 2.45 -63.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258475561.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.931 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds