Wall clock time and date at job start Mon Mar 30 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70943 * 125.58744 * 2 1 4 4 C 1.70771 * 91.12669 * 180.19973 * 3 2 1 5 5 N 1.28652 * 110.55929 * 359.80962 * 4 3 2 6 6 C 1.33559 * 115.76777 * 359.97438 * 5 4 3 7 7 C 1.47266 * 123.14046 * 180.02562 * 6 5 4 8 8 O 1.21631 * 119.99878 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99956 * 0.02808 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 C 1.50696 * 109.46969 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99875 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99961 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46983 * 89.99938 * 16 14 12 18 18 H 1.48499 * 109.47218 * 210.00008 * 16 14 12 19 19 H 1.48505 * 109.47256 * 330.00013 * 16 14 12 20 20 H 1.08998 * 109.47180 * 270.15174 * 1 2 3 21 21 H 1.09000 * 109.46918 * 30.14868 * 1 2 3 22 22 H 1.08996 * 109.47320 * 150.14689 * 1 2 3 23 23 H 1.08000 * 124.71962 * 179.84596 * 4 3 2 24 24 H 0.97005 * 120.00161 * 359.72135 * 9 7 6 25 25 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 26 26 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 27 27 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 28 28 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 29 29 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3902 0.0000 4 6 3.9099 0.4239 -0.0060 5 7 3.6008 -0.8250 -0.0036 6 6 2.2938 -1.0996 0.0033 7 6 1.7595 -2.4719 0.0074 8 8 0.5572 -2.6564 0.0132 9 7 2.6026 -3.5233 0.0048 10 6 2.0710 -4.8886 0.0084 11 6 3.2301 -5.8872 -0.0027 12 6 2.6833 -7.2914 0.0016 13 1 1.6159 -7.4553 0.0108 14 6 3.5459 -8.3672 -0.0062 15 7 3.0686 -9.5927 -0.0030 16 14 5.3921 -8.0838 -0.0214 17 1 5.8930 -8.0096 1.3746 18 1 6.0595 -9.2067 -0.7277 19 1 5.6917 -6.8098 -0.7232 20 1 -0.3633 0.0027 1.0276 21 1 -0.3633 0.8887 -0.5161 22 1 -0.3634 -0.8912 -0.5115 23 1 4.9193 0.8077 -0.0104 24 1 3.5614 -3.3762 -0.0039 25 1 1.4682 -5.0413 0.9036 26 1 1.4525 -5.0399 -0.8763 27 1 3.8329 -5.7343 -0.8979 28 1 3.8485 -5.7358 0.8821 29 1 3.6754 -10.3494 -0.0081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259577141.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:07 Heat of formation + Delta-G solvation = -4.401908 kcal Electronic energy + Delta-G solvation = -14334.510645 eV Core-core repulsion = 11770.185187 eV Total energy + Delta-G solvation = -2564.325457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49010 -38.39198 -35.10086 -32.89360 -32.57932 -30.33785 -27.89077 -25.14276 -24.35213 -22.29645 -20.73962 -19.39189 -18.46170 -16.85713 -16.42496 -15.62161 -15.58237 -14.77621 -14.41112 -14.13974 -13.65135 -13.26985 -13.09299 -12.98113 -12.65665 -12.54328 -11.83154 -11.46553 -11.18860 -10.37434 -10.26474 -10.05995 -9.92684 -9.63567 -9.53987 -9.28934 -9.13409 -8.61263 -8.47965 -6.09030 -4.08973 0.38561 1.03364 1.43004 1.97609 3.28359 3.35882 3.38519 3.52048 3.59997 4.08408 4.40667 4.74408 4.86582 5.01795 5.24188 5.44703 5.61868 5.72493 6.08975 6.14763 6.21576 6.57787 6.76225 7.13545 7.25880 7.27560 7.68580 7.94249 8.44327 8.52634 8.95050 9.51358 11.03911 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045000 B = 0.004890 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.072452 B = 5724.211447 C = 6320.516804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.180 4.180 3 S 0.185 5.815 4 C -0.005 4.005 5 N -0.436 5.436 6 C -0.003 4.003 7 C 0.585 3.415 8 O -0.539 6.539 9 N -0.706 5.706 10 C 0.129 3.871 11 C -0.023 4.023 12 C -0.522 4.522 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.881 3.119 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 H 0.082 0.918 21 H 0.067 0.933 22 H 0.108 0.892 23 H 0.204 0.796 24 H 0.405 0.595 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 24.200 -0.075 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.304 4.304 3 S 0.440 5.560 4 C -0.305 4.305 5 N -0.150 5.150 6 C -0.137 4.137 7 C 0.368 3.632 8 O -0.418 6.418 9 N -0.355 5.355 10 C 0.007 3.993 11 C -0.060 4.060 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.133 4.133 15 N -0.537 5.537 16 Si 0.709 3.291 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 H 0.100 0.900 21 H 0.086 0.914 22 H 0.127 0.873 23 H 0.220 0.780 24 H 0.240 0.760 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.468 24.452 -0.071 24.457 hybrid contribution 1.412 -0.804 0.030 1.625 sum 1.879 23.648 -0.041 23.723 Atomic orbital electron populations 1.20555 0.85549 1.04629 1.03833 1.25595 1.03581 0.95927 1.05336 1.82800 0.97655 1.09924 1.65623 1.28293 1.04328 0.91551 1.06331 1.66955 1.16317 1.18595 1.13110 1.20568 0.87592 0.96067 1.09448 1.17040 0.86086 0.82664 0.77407 1.90736 1.14293 1.85177 1.51548 1.46192 1.10383 1.06762 1.72141 1.21588 0.98180 0.77743 1.01775 1.19800 0.94097 0.95126 0.97008 1.20912 0.95580 0.87921 1.51642 0.90575 1.24994 0.98930 0.94995 0.94350 1.69905 1.35249 0.98068 1.50486 0.86757 0.85696 0.78141 0.78554 1.20209 1.21271 1.18985 0.89976 0.91402 0.87344 0.77970 0.76018 0.91691 0.91675 0.95895 0.96331 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.64 36.01 0.35 -0.61 15 2 C -0.18 -2.21 6.40 -35.39 -0.23 -2.44 15 3 S 0.19 1.54 22.94 -107.50 -2.47 -0.93 15 4 C -0.01 -0.05 12.17 51.43 0.63 0.58 15 5 N -0.44 -5.94 10.12 -12.36 -0.13 -6.06 15 6 C 0.00 -0.04 6.70 -84.53 -0.57 -0.61 15 7 C 0.59 10.62 7.80 -12.59 -0.10 10.52 15 8 O -0.54 -10.80 14.11 5.25 0.07 -10.73 15 9 N -0.71 -13.11 5.55 -61.43 -0.34 -13.45 15 10 C 0.13 2.75 5.61 -4.04 -0.02 2.73 15 11 C -0.02 -0.54 4.15 -27.89 -0.12 -0.65 15 12 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 15 13 H 0.08 2.33 7.99 -52.49 -0.42 1.91 15 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 15 N -0.90 -27.65 13.96 55.43 0.77 -26.87 15 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 15 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 19 H -0.27 -6.18 6.54 56.52 0.37 -5.81 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.11 1.46 6.01 -51.93 -0.31 1.15 15 23 H 0.20 1.15 8.06 -52.49 -0.42 0.73 15 24 H 0.41 6.96 7.99 -40.82 -0.33 6.64 15 25 H 0.06 1.43 8.14 -51.93 -0.42 1.00 15 26 H 0.06 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.02 0.54 7.20 -51.93 -0.37 0.16 15 28 H 0.02 0.43 7.57 -51.93 -0.39 0.04 15 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -32.77 268.20 -6.30 -39.07 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.10 Total: 1.86 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.49 Total: -3.78 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.31 Total: -46.39 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.77 -6.30 -39.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577141.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.669 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds