Wall clock time and date at job start Mon Mar 30 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70943 * 125.58744 * 2 1 4 4 C 1.70771 * 91.12669 * 180.19973 * 3 2 1 5 5 N 1.28652 * 110.55929 * 359.80962 * 4 3 2 6 6 C 1.33559 * 115.76777 * 359.97438 * 5 4 3 7 7 C 1.47266 * 123.14046 * 180.02562 * 6 5 4 8 8 O 1.21631 * 119.99878 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99956 * 0.02808 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 C 1.50696 * 109.46969 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00408 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99883 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99875 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99961 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46983 * 89.99938 * 16 14 12 18 18 H 1.48499 * 109.47218 * 210.00008 * 16 14 12 19 19 H 1.48505 * 109.47256 * 330.00013 * 16 14 12 20 20 H 1.08998 * 109.47180 * 270.15174 * 1 2 3 21 21 H 1.09000 * 109.46918 * 30.14868 * 1 2 3 22 22 H 1.08996 * 109.47320 * 150.14689 * 1 2 3 23 23 H 1.08000 * 124.71962 * 179.84596 * 4 3 2 24 24 H 0.97005 * 120.00161 * 359.72135 * 9 7 6 25 25 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 26 26 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 27 27 H 1.09000 * 109.46986 * 299.99958 * 11 10 9 28 28 H 1.09002 * 109.46857 * 60.00093 * 11 10 9 29 29 H 0.96999 * 119.99804 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3902 0.0000 4 6 3.9099 0.4239 -0.0060 5 7 3.6008 -0.8250 -0.0036 6 6 2.2938 -1.0996 0.0033 7 6 1.7595 -2.4719 0.0074 8 8 0.5572 -2.6564 0.0132 9 7 2.6026 -3.5233 0.0048 10 6 2.0710 -4.8886 0.0084 11 6 3.2301 -5.8872 -0.0027 12 6 2.6833 -7.2914 0.0016 13 1 1.6159 -7.4553 0.0108 14 6 3.5459 -8.3672 -0.0062 15 7 3.0686 -9.5927 -0.0030 16 14 5.3921 -8.0838 -0.0214 17 1 5.8930 -8.0096 1.3746 18 1 6.0595 -9.2067 -0.7277 19 1 5.6917 -6.8098 -0.7232 20 1 -0.3633 0.0027 1.0276 21 1 -0.3633 0.8887 -0.5161 22 1 -0.3634 -0.8912 -0.5115 23 1 4.9193 0.8077 -0.0104 24 1 3.5614 -3.3762 -0.0039 25 1 1.4682 -5.0413 0.9036 26 1 1.4525 -5.0399 -0.8763 27 1 3.8329 -5.7343 -0.8979 28 1 3.8485 -5.7358 0.8821 29 1 3.6754 -10.3494 -0.0081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259577141.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:07 Heat of formation + Delta-G solvation = -29.180214 kcal Electronic energy + Delta-G solvation = -14335.585113 eV Core-core repulsion = 11770.185187 eV Total energy + Delta-G solvation = -2565.399925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58335 -39.63941 -36.76971 -34.85757 -33.58346 -32.20358 -29.03253 -26.79152 -25.32446 -23.63628 -22.55425 -20.70745 -19.37906 -18.94075 -17.56946 -16.88658 -16.84615 -16.22112 -15.89300 -15.77573 -15.03433 -14.64756 -14.58326 -14.11706 -13.83703 -13.54699 -13.38385 -13.07360 -12.73538 -12.22986 -12.19458 -11.79525 -11.55116 -11.03535 -10.80975 -10.75928 -10.39278 -10.23190 -9.83448 -8.32303 -6.39378 -0.48097 0.26983 0.63513 0.94972 1.37243 1.39292 1.51133 2.25006 2.28432 2.34847 3.02371 3.16212 3.79712 3.97509 4.15226 4.32751 4.37387 4.63281 4.70287 4.77850 4.84982 5.03896 5.23841 5.34977 5.38636 5.60095 6.19184 6.30542 6.61836 6.68968 7.12121 7.25174 8.84233 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045000 B = 0.004890 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.072452 B = 5724.211447 C = 6320.516804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.200 4.200 3 S 0.291 5.709 4 C -0.007 4.007 5 N -0.471 5.471 6 C -0.035 4.035 7 C 0.580 3.420 8 O -0.569 6.569 9 N -0.704 5.704 10 C 0.145 3.855 11 C -0.012 4.012 12 C -0.539 4.539 13 H 0.033 0.967 14 C 0.007 3.993 15 N -0.948 5.948 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.242 1.242 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.077 0.923 23 H 0.242 0.758 24 H 0.413 0.587 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 27.707 -0.072 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.325 4.325 3 S 0.546 5.454 4 C -0.306 4.306 5 N -0.186 5.186 6 C -0.169 4.169 7 C 0.366 3.634 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.021 3.979 11 C -0.050 4.050 12 C -0.577 4.577 13 H 0.051 0.949 14 C -0.191 4.191 15 N -0.587 5.587 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.166 1.166 20 H 0.104 0.896 21 H 0.117 0.883 22 H 0.095 0.905 23 H 0.258 0.742 24 H 0.250 0.750 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.840 28.007 -0.068 28.151 hybrid contribution 0.571 -1.751 0.030 1.842 sum 3.411 26.256 -0.038 26.477 Atomic orbital electron populations 1.20542 0.85300 1.04658 1.04083 1.25951 1.04583 0.97732 1.04185 1.82452 0.94471 1.05757 1.62681 1.29005 1.06849 0.90840 1.03892 1.66918 1.15556 1.20894 1.15210 1.20138 0.89034 0.94602 1.13132 1.17583 0.85671 0.84000 0.76172 1.90715 1.15548 1.86032 1.52671 1.45984 1.10910 1.05683 1.72868 1.21128 0.97057 0.79275 1.00415 1.19641 0.94757 0.92778 0.97844 1.21213 0.93956 0.90847 1.51678 0.94884 1.26030 1.05006 0.94380 0.93645 1.70062 1.37531 0.99325 1.51823 0.85571 0.78148 0.79031 0.79358 1.18960 1.20849 1.16570 0.89588 0.88264 0.90466 0.74190 0.75033 0.93168 0.93191 0.94837 0.94961 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.64 71.24 0.69 -1.14 15 2 C -0.20 -4.51 6.40 24.99 0.16 -4.35 15 3 S 0.29 3.59 22.94 -56.49 -1.30 2.30 15 4 C -0.01 -0.10 12.17 130.71 1.59 1.49 15 5 N -0.47 -11.86 10.12 -193.02 -1.95 -13.82 15 6 C -0.04 -1.03 6.70 40.56 0.27 -0.76 15 7 C 0.58 21.49 7.80 86.62 0.68 22.17 15 8 O -0.57 -23.82 14.11 -4.13 -0.06 -23.87 15 9 N -0.70 -26.44 5.55 -466.51 -2.59 -29.03 15 10 C 0.14 6.36 5.61 86.38 0.48 6.85 15 11 C -0.01 -0.59 4.15 29.85 0.12 -0.47 15 12 C -0.54 -31.67 9.66 25.60 0.25 -31.42 15 13 H 0.03 2.15 7.99 -2.91 -0.02 2.13 15 14 C 0.01 0.40 5.47 84.66 0.46 0.86 15 15 N -0.95 -59.89 13.96 21.45 0.30 -59.59 15 16 Si 0.96 43.85 27.47 68.60 1.88 45.73 15 17 H -0.26 -11.61 7.11 99.48 0.71 -10.91 15 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 19 H -0.24 -10.16 6.54 99.48 0.65 -9.51 15 20 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.08 2.14 6.01 -2.39 -0.01 2.12 15 23 H 0.24 1.49 8.06 -2.91 -0.02 1.46 15 24 H 0.41 13.98 7.99 -92.70 -0.74 13.24 15 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.03 1.52 7.20 -2.39 -0.02 1.51 15 28 H 0.03 1.45 7.57 -2.39 -0.02 1.43 15 29 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 Total: -1.00 -74.36 268.20 1.37 -72.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.38 Total: 12.05 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 4.70 Total: -6.76 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -4.24 Total: -102.44 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.30 Total: 2.30 kcal Total: -74.36 1.37 -72.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577141.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.812 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds