Wall clock time and date at job start Mon Mar 30 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70939 * 125.58745 * 2 1 4 4 C 1.70772 * 91.12833 * 180.19517 * 3 2 1 5 5 N 1.28645 * 110.55876 * 359.80613 * 4 3 2 6 6 C 1.33550 * 115.76948 * 359.97438 * 5 4 3 7 7 C 1.47265 * 123.14517 * 180.02562 * 6 5 4 8 8 O 1.21639 * 120.00386 * 185.99146 * 7 6 5 9 9 N 1.34776 * 119.99654 * 5.98779 * 7 6 5 10 10 C 1.46495 * 120.00347 * 5.58511 * 9 7 6 11 11 C 1.46503 * 120.00082 * 185.58145 * 9 7 6 12 12 C 1.50696 * 109.47481 * 270.00573 * 11 9 7 13 13 H 1.08008 * 119.99895 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00352 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00133 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00249 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46884 * 119.99703 * 16 14 12 19 19 H 1.48498 * 109.47149 * 239.99955 * 16 14 12 20 20 H 1.09005 * 109.47082 * 270.15768 * 1 2 3 21 21 H 1.08993 * 109.47052 * 30.15642 * 1 2 3 22 22 H 1.08997 * 109.46953 * 150.15560 * 1 2 3 23 23 H 1.08003 * 124.71583 * 179.83857 * 4 3 2 24 24 H 1.09002 * 109.47315 * 275.46318 * 10 9 7 25 25 H 1.09008 * 109.47048 * 35.45834 * 10 9 7 26 26 H 1.09002 * 109.47446 * 155.46127 * 10 9 7 27 27 H 1.09001 * 109.47098 * 30.00122 * 11 9 7 28 28 H 1.08997 * 109.47448 * 149.99737 * 11 9 7 29 29 H 0.96994 * 120.00296 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3901 0.0000 4 6 3.9098 0.4239 -0.0058 5 7 3.6008 -0.8249 -0.0034 6 6 2.2939 -1.0996 0.0035 7 6 1.7595 -2.4719 0.0078 8 8 0.5621 -2.6587 -0.0960 9 7 2.5974 -3.5209 0.1265 10 6 4.0235 -3.2949 0.3739 11 6 2.0820 -4.8871 0.0083 12 6 1.6672 -5.3871 1.3680 13 1 1.7770 -4.7509 2.2339 14 6 1.1476 -6.6566 1.5068 15 7 1.0135 -7.4311 0.4525 16 14 0.6342 -7.2766 3.1926 17 1 0.8858 -6.2207 4.2060 18 1 -0.8120 -7.6135 3.1766 19 1 1.4211 -8.4884 3.5351 20 1 -0.3633 0.0028 1.0277 21 1 -0.3633 0.8885 -0.5162 22 1 -0.3633 -0.8914 -0.5114 23 1 4.9193 0.8078 -0.0104 24 1 4.5333 -3.1196 -0.5734 25 1 4.1470 -2.4252 1.0194 26 1 4.4514 -4.1718 0.8599 27 1 1.2205 -4.8939 -0.6596 28 1 2.8597 -5.5352 -0.3955 29 1 0.6476 -8.3241 0.5500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259655791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:10 Heat of formation + Delta-G solvation = 18.876882 kcal Electronic energy + Delta-G solvation = -14989.196451 eV Core-core repulsion = 12425.880438 eV Total energy + Delta-G solvation = -2563.316013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25326 -37.90281 -34.93492 -32.56549 -32.33313 -28.49336 -27.15123 -25.52184 -24.35463 -23.17739 -21.02710 -18.38015 -17.92879 -16.48563 -15.71324 -15.50674 -15.15048 -14.81848 -14.09918 -13.69033 -13.22477 -12.87296 -12.71784 -12.40719 -12.21003 -12.01118 -11.58682 -11.52568 -11.16086 -10.83290 -10.56619 -10.12139 -9.59127 -9.53132 -9.34166 -8.91412 -8.79112 -8.40650 -7.55082 -6.00961 -4.05323 0.66316 1.30134 1.69211 2.33930 3.32350 3.39364 3.44405 3.94749 4.02078 4.36664 4.49573 5.03674 5.13641 5.24267 5.33501 5.71273 5.85307 5.95901 6.09729 6.29858 6.42447 6.60099 7.10235 7.44937 7.51613 7.64639 7.95791 8.26348 8.45313 8.91593 9.08858 9.59382 11.07114 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.039960 B = 0.006328 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.527863 B = 4423.838856 C = 4679.481033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.182 4.182 3 S 0.167 5.833 4 C -0.014 4.014 5 N -0.427 5.427 6 C 0.006 3.994 7 C 0.576 3.424 8 O -0.533 6.533 9 N -0.582 5.582 10 C 0.095 3.905 11 C 0.245 3.755 12 C -0.522 4.522 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.899 3.101 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.112 0.888 23 H 0.200 0.800 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 17.501 -1.180 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.305 4.305 3 S 0.421 5.579 4 C -0.313 4.313 5 N -0.141 5.141 6 C -0.128 4.128 7 C 0.360 3.640 8 O -0.411 6.411 9 N -0.312 5.312 10 C -0.049 4.049 11 C 0.126 3.874 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.130 0.870 23 H 0.217 0.783 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.922 17.802 -1.292 18.515 hybrid contribution -0.266 -1.273 0.949 1.610 sum 4.656 16.529 -0.343 17.176 Atomic orbital electron populations 1.20569 0.85756 1.04651 1.03725 1.25539 1.03431 0.95636 1.05930 1.82670 0.98258 1.10541 1.66401 1.28399 1.04048 0.91918 1.06969 1.67383 1.16375 1.17404 1.12941 1.20822 0.87320 0.96619 1.08037 1.17017 0.86030 0.82252 0.78692 1.90710 1.14291 1.84439 1.51661 1.48016 1.08014 1.07871 1.67300 1.21812 0.81208 1.01426 1.00459 1.19365 0.95383 0.74850 0.97819 1.21460 1.41849 0.99121 0.93689 0.92392 1.24934 0.95541 0.96610 0.97058 1.69943 1.45635 1.09091 1.28830 0.86430 0.78316 0.78555 0.84051 1.19822 1.20871 1.20974 0.90227 0.91689 0.86989 0.78296 0.93671 0.90808 0.91825 0.93871 0.94702 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.72 36.01 0.35 -0.90 15 2 C -0.18 -2.76 6.40 -35.38 -0.23 -2.99 15 3 S 0.17 1.76 22.94 -107.50 -2.47 -0.71 15 4 C -0.01 -0.16 12.17 51.43 0.63 0.47 15 5 N -0.43 -6.73 6.95 -12.36 -0.09 -6.81 15 6 C 0.01 0.11 6.43 -84.53 -0.54 -0.44 15 7 C 0.58 13.21 7.63 -12.59 -0.10 13.12 15 8 O -0.53 -13.59 13.73 5.24 0.07 -13.52 15 9 N -0.58 -13.66 2.86 -184.29 -0.53 -14.18 15 10 C 0.09 1.81 9.19 59.84 0.55 2.36 15 11 C 0.24 6.70 5.09 -5.19 -0.03 6.67 15 12 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 15 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 15 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 15 N -0.90 -27.05 13.29 55.43 0.74 -26.32 15 16 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 15 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 15 18 H -0.28 -6.98 7.11 56.52 0.40 -6.57 15 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 22 H 0.11 1.92 5.88 -51.93 -0.31 1.62 15 23 H 0.20 1.43 8.06 -52.48 -0.42 1.01 15 24 H 0.04 0.79 8.07 -51.93 -0.42 0.37 15 25 H 0.07 1.33 5.86 -51.92 -0.30 1.02 15 26 H 0.06 1.20 8.03 -51.93 -0.42 0.79 15 27 H 0.04 1.30 7.50 -51.93 -0.39 0.91 15 28 H 0.04 0.96 8.07 -51.93 -0.42 0.54 15 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -33.53 265.97 -6.14 -39.67 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.07 Total: -3.74 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.21 Total: 4.31 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.12 Total: -47.31 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.71 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.53 -6.14 -39.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259655791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.548 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds