Wall clock time and date at job start Mon Mar 30 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70939 * 125.58745 * 2 1 4 4 C 1.70772 * 91.12833 * 180.19517 * 3 2 1 5 5 N 1.28645 * 110.55876 * 359.80613 * 4 3 2 6 6 C 1.33550 * 115.76948 * 359.97438 * 5 4 3 7 7 C 1.47265 * 123.14517 * 180.02562 * 6 5 4 8 8 O 1.21639 * 120.00386 * 185.99146 * 7 6 5 9 9 N 1.34776 * 119.99654 * 5.98779 * 7 6 5 10 10 C 1.46495 * 120.00347 * 5.58511 * 9 7 6 11 11 C 1.46503 * 120.00082 * 185.58145 * 9 7 6 12 12 C 1.50696 * 109.47481 * 270.00573 * 11 9 7 13 13 H 1.08008 * 119.99895 * 359.97438 * 12 11 9 14 14 C 1.37872 * 120.00352 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00133 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 120.00249 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46884 * 119.99703 * 16 14 12 19 19 H 1.48498 * 109.47149 * 239.99955 * 16 14 12 20 20 H 1.09005 * 109.47082 * 270.15768 * 1 2 3 21 21 H 1.08993 * 109.47052 * 30.15642 * 1 2 3 22 22 H 1.08997 * 109.46953 * 150.15560 * 1 2 3 23 23 H 1.08003 * 124.71583 * 179.83857 * 4 3 2 24 24 H 1.09002 * 109.47315 * 275.46318 * 10 9 7 25 25 H 1.09008 * 109.47048 * 35.45834 * 10 9 7 26 26 H 1.09002 * 109.47446 * 155.46127 * 10 9 7 27 27 H 1.09001 * 109.47098 * 30.00122 * 11 9 7 28 28 H 1.08997 * 109.47448 * 149.99737 * 11 9 7 29 29 H 0.96994 * 120.00296 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3901 0.0000 4 6 3.9098 0.4239 -0.0058 5 7 3.6008 -0.8249 -0.0034 6 6 2.2939 -1.0996 0.0035 7 6 1.7595 -2.4719 0.0078 8 8 0.5621 -2.6587 -0.0960 9 7 2.5974 -3.5209 0.1265 10 6 4.0235 -3.2949 0.3739 11 6 2.0820 -4.8871 0.0083 12 6 1.6672 -5.3871 1.3680 13 1 1.7770 -4.7509 2.2339 14 6 1.1476 -6.6566 1.5068 15 7 1.0135 -7.4311 0.4525 16 14 0.6342 -7.2766 3.1926 17 1 0.8858 -6.2207 4.2060 18 1 -0.8120 -7.6135 3.1766 19 1 1.4211 -8.4884 3.5351 20 1 -0.3633 0.0028 1.0277 21 1 -0.3633 0.8885 -0.5162 22 1 -0.3633 -0.8914 -0.5114 23 1 4.9193 0.8078 -0.0104 24 1 4.5333 -3.1196 -0.5734 25 1 4.1470 -2.4252 1.0194 26 1 4.4514 -4.1718 0.8599 27 1 1.2205 -4.8939 -0.6596 28 1 2.8597 -5.5352 -0.3955 29 1 0.6476 -8.3241 0.5500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259655791.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:10 Heat of formation + Delta-G solvation = -4.549264 kcal Electronic energy + Delta-G solvation = -14990.212285 eV Core-core repulsion = 12425.880438 eV Total energy + Delta-G solvation = -2564.331847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59564 -39.45972 -36.77277 -34.73468 -33.51926 -30.34222 -28.63125 -27.22944 -25.66113 -24.86658 -22.58033 -19.79120 -19.19164 -18.71701 -17.26270 -17.01040 -16.63978 -16.47987 -15.70147 -15.24880 -14.65755 -14.24163 -14.06618 -13.91510 -13.73800 -13.64183 -13.38106 -13.07392 -12.75652 -12.65837 -12.54601 -12.21721 -11.71920 -10.84359 -10.66929 -10.45694 -10.29623 -9.90948 -9.41176 -8.24430 -6.39859 -0.42105 0.32443 0.68963 1.08873 1.35150 1.37343 1.49993 2.27233 2.43026 2.45154 3.04295 3.22997 3.80897 4.01870 4.19710 4.51717 4.63232 4.72174 4.77584 4.83196 4.97307 5.12605 5.14931 5.28051 5.55033 5.81126 6.02047 6.46929 6.67162 6.72293 7.22045 7.37765 8.82999 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.039960 B = 0.006328 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.527863 B = 4423.838856 C = 4679.481033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.205 4.205 3 S 0.286 5.714 4 C -0.009 4.009 5 N -0.460 5.460 6 C -0.028 4.028 7 C 0.565 3.435 8 O -0.577 6.577 9 N -0.596 5.596 10 C 0.102 3.898 11 C 0.260 3.740 12 C -0.542 4.542 13 H 0.048 0.952 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.972 3.028 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.080 0.920 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.246 0.754 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.002 0.998 28 H 0.025 0.975 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 20.209 -0.084 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.329 4.329 3 S 0.541 5.459 4 C -0.307 4.307 5 N -0.175 5.175 6 C -0.161 4.161 7 C 0.351 3.649 8 O -0.458 6.458 9 N -0.325 5.325 10 C -0.041 4.041 11 C 0.139 3.861 12 C -0.581 4.581 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.796 3.204 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.192 1.192 20 H 0.099 0.901 21 H 0.119 0.881 22 H 0.091 0.909 23 H 0.262 0.738 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.077 0.923 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.215 20.547 -0.201 21.467 hybrid contribution -0.629 -1.916 0.540 2.088 sum 5.586 18.631 0.339 19.453 Atomic orbital electron populations 1.20520 0.85833 1.04553 1.03772 1.25878 1.04394 0.97860 1.04792 1.82273 0.94731 1.05674 1.63196 1.29183 1.06752 0.90966 1.03827 1.67264 1.15014 1.19955 1.15228 1.20178 0.89226 0.94446 1.12271 1.17783 0.85569 0.84183 0.77323 1.90670 1.16120 1.85719 1.53316 1.48047 1.09907 1.06623 1.67957 1.21921 0.78766 1.01781 1.01604 1.18849 0.93577 0.77339 0.96296 1.21651 1.42814 0.99644 0.93983 0.93326 1.25874 0.95106 0.96613 1.01437 1.70054 1.45906 1.09592 1.31145 0.85311 0.78093 0.78313 0.78723 1.19428 1.20331 1.19171 0.90100 0.88055 0.90852 0.73810 0.92072 0.89192 0.92349 0.98018 0.95663 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.72 71.24 0.69 -1.77 15 2 C -0.20 -5.91 6.40 24.99 0.16 -5.75 15 3 S 0.29 4.69 22.94 -56.49 -1.30 3.39 15 4 C -0.01 -0.16 12.17 130.71 1.59 1.43 15 5 N -0.46 -13.60 6.95 -193.03 -1.34 -14.94 15 6 C -0.03 -1.01 6.43 40.56 0.26 -0.75 15 7 C 0.56 27.19 7.63 86.62 0.66 27.85 15 8 O -0.58 -31.59 13.73 -4.15 -0.06 -31.64 15 9 N -0.60 -29.30 2.86 -855.21 -2.44 -31.74 15 10 C 0.10 3.93 9.19 127.77 1.17 5.11 15 11 C 0.26 15.14 5.09 85.63 0.44 15.58 15 12 C -0.54 -33.10 9.39 25.60 0.24 -32.86 15 13 H 0.05 2.98 7.81 -2.91 -0.02 2.96 15 14 C 0.01 0.52 5.46 84.65 0.46 0.98 15 15 N -0.93 -57.55 13.29 21.45 0.28 -57.27 15 16 Si 0.97 46.38 29.54 68.60 2.03 48.41 15 17 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 20 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 21 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.07 2.66 5.88 -2.39 -0.01 2.65 15 23 H 0.25 2.02 8.06 -2.91 -0.02 2.00 15 24 H 0.06 2.13 8.07 -2.39 -0.02 2.11 15 25 H 0.09 3.20 5.86 -2.38 -0.01 3.18 15 26 H 0.06 2.26 8.03 -2.39 -0.02 2.24 15 27 H 0.00 0.11 7.50 -2.39 -0.02 0.09 15 28 H 0.03 1.48 8.07 -2.39 -0.02 1.46 15 29 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 Total: -1.00 -77.88 265.97 4.01 -73.86 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.16 Total: 0.11 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.68 Total: 9.81 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.50 Total: -103.95 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.06 Total: -31.64 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -77.88 4.01 -73.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259655791.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.315 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds