Wall clock time and date at job start Mon Mar 30 2020 04:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46497 * 119.99990 * 2 1 4 4 C 1.52996 * 109.47809 * 270.00156 * 3 2 1 5 5 C 1.50696 * 109.47830 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99448 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00258 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99974 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00070 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47273 * 90.00282 * 9 7 5 11 11 H 1.48500 * 109.47464 * 210.00319 * 9 7 5 12 12 H 1.48501 * 109.47324 * 330.00326 * 9 7 5 13 13 C 1.34781 * 120.00202 * 180.02562 * 2 1 3 14 14 O 1.21681 * 119.99748 * 180.46044 * 13 2 1 15 15 C 1.46684 * 119.99782 * 0.46183 * 13 2 1 16 16 C 1.35661 * 126.12923 * 171.66211 * 15 13 2 17 17 N 1.30934 * 114.19220 * 180.02562 * 16 15 13 18 18 C 1.29427 * 117.36789 * 0.02562 * 17 16 15 19 19 S 1.70959 * 110.38956 * 0.02562 * 18 17 16 20 20 H 1.08997 * 109.47610 * 263.52500 * 1 2 3 21 21 H 1.09003 * 109.47493 * 23.53223 * 1 2 3 22 22 H 1.09010 * 109.46931 * 143.52569 * 1 2 3 23 23 H 1.09006 * 109.47215 * 30.00630 * 3 2 1 24 24 H 1.08997 * 109.47120 * 150.00066 * 3 2 1 25 25 H 1.09006 * 109.47119 * 300.00532 * 4 3 2 26 26 H 1.09011 * 109.47055 * 59.99693 * 4 3 2 27 27 H 0.96995 * 120.00273 * 179.97438 * 8 7 5 28 28 H 1.07996 * 122.90265 * 0.05713 * 16 15 13 29 29 H 1.07997 * 124.81424 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2065 3.0153 -1.4424 6 1 3.4764 3.4829 -0.5071 7 6 3.5508 3.6126 -2.6364 8 7 4.2085 4.7515 -2.6364 9 14 3.0833 2.8041 -4.2542 10 1 1.7470 3.2900 -4.6824 11 1 4.0905 3.1493 -5.2894 12 1 3.0407 1.3304 -4.0770 13 6 2.1389 -1.1672 -0.0005 14 8 3.3557 -1.1671 0.0079 15 6 1.4055 -2.4375 -0.0113 16 6 1.9456 -3.6716 -0.1720 17 7 1.0727 -4.6471 -0.1437 18 6 -0.1699 -4.3288 0.0290 19 16 -0.3352 -2.6339 0.1795 20 1 -0.3634 -0.1159 1.0210 21 1 -0.3634 0.9422 -0.4103 22 1 -0.3633 -0.8264 -0.6110 23 1 1.6084 2.0284 0.5140 24 1 3.1498 1.1384 0.5138 25 1 3.0415 0.9509 -1.9564 26 1 1.5000 1.8409 -1.9563 27 1 4.4510 5.1716 -3.4763 28 1 3.0040 -3.8352 -0.3107 29 1 -0.9867 -5.0340 0.0720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259655822.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:35 Heat of formation + Delta-G solvation = 17.842155 kcal Electronic energy + Delta-G solvation = -14687.403740 eV Core-core repulsion = 12124.042858 eV Total energy + Delta-G solvation = -2563.360882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12405 -39.05515 -35.64570 -33.18762 -31.33165 -29.96998 -27.09188 -26.39361 -24.67250 -21.92880 -20.35691 -19.60834 -18.27551 -16.97343 -16.46324 -16.13457 -15.58816 -14.65808 -14.32434 -14.11345 -13.98393 -13.48420 -13.13746 -13.02450 -12.69021 -12.46995 -11.68636 -11.60704 -11.01649 -10.57240 -10.13157 -9.96218 -9.83735 -9.65642 -9.51840 -9.27992 -9.17972 -8.57490 -8.30816 -6.08222 -4.07296 0.17454 1.08183 1.47917 2.44812 3.14858 3.27777 3.32202 3.36796 3.42380 4.13449 4.42707 4.60269 4.96748 5.01671 5.22588 5.26015 5.27241 5.58831 5.89378 5.98163 6.27309 6.52716 6.59646 7.12121 7.29607 7.45352 7.59586 7.72514 8.28582 8.46272 8.94786 9.53606 11.04857 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.039938 B = 0.005889 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.910300 B = 4753.286829 C = 4807.987592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.606 5.606 3 C 0.127 3.873 4 C -0.024 4.024 5 C -0.521 4.521 6 H 0.075 0.925 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.585 3.415 14 O -0.519 6.519 15 C -0.280 4.280 16 C 0.108 3.892 17 N -0.479 5.479 18 C -0.008 4.008 19 S 0.191 5.809 20 H 0.064 0.936 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.022 0.978 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.187 0.813 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.521 -14.962 5.807 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.339 5.339 3 C 0.007 3.993 4 C -0.062 4.062 5 C -0.559 4.559 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.370 3.630 14 O -0.396 6.396 15 C -0.404 4.404 16 C -0.049 4.049 17 N -0.192 5.192 18 C -0.302 4.302 19 S 0.446 5.554 20 H 0.083 0.917 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.101 0.899 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.074 0.926 28 H 0.204 0.796 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.564 -14.755 5.805 20.866 hybrid contribution 0.485 -0.547 -1.141 1.355 sum -13.079 -15.302 4.664 20.663 Atomic orbital electron populations 1.22021 0.80750 1.03429 1.01856 1.47981 1.06546 1.07097 1.72239 1.21767 0.96370 0.80609 1.00534 1.19891 0.96685 0.97539 0.92121 1.20941 1.35951 1.04292 0.94740 0.90734 1.24968 0.94477 0.94593 0.99107 1.69901 1.39623 1.17366 1.27003 0.86785 0.78340 0.80581 0.83661 1.20288 1.21222 1.19077 1.16801 0.86757 0.81813 0.77615 1.90863 1.12326 1.86450 1.49975 1.26008 0.96579 0.99970 1.17890 1.22230 1.01239 0.85313 0.96149 1.66341 1.00987 1.35907 1.16006 1.29175 0.97802 1.01375 1.01879 1.84404 1.04323 1.02387 1.64300 0.91734 0.88555 0.91488 0.90657 0.89855 0.95964 0.97013 0.92620 0.79598 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.95 59.84 0.54 1.29 15 2 N -0.61 -10.16 2.87 -183.13 -0.53 -10.68 15 3 C 0.13 2.53 5.32 -4.05 -0.02 2.51 15 4 C -0.02 -0.58 4.36 -27.89 -0.12 -0.70 15 5 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 15 6 H 0.07 2.24 7.99 -52.49 -0.42 1.82 15 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 8 N -0.90 -27.75 13.96 55.43 0.77 -26.98 15 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 15 13 C 0.58 10.45 7.64 -12.85 -0.10 10.35 15 14 O -0.52 -11.28 16.45 5.21 0.09 -11.19 15 15 C -0.28 -3.98 6.25 -37.10 -0.23 -4.21 15 16 C 0.11 1.49 11.10 -18.86 -0.21 1.28 15 17 N -0.48 -6.08 10.51 -15.38 -0.16 -6.24 15 18 C -0.01 -0.08 12.22 51.75 0.63 0.55 15 19 S 0.19 1.80 18.15 -107.50 -1.95 -0.15 15 20 H 0.06 0.60 7.83 -51.93 -0.41 0.19 15 21 H 0.10 1.06 8.02 -51.93 -0.42 0.65 15 22 H 0.07 0.71 4.58 -23.50 -0.11 0.60 15 23 H 0.08 1.34 8.07 -51.93 -0.42 0.92 15 24 H 0.08 1.79 7.41 -51.93 -0.38 1.41 15 25 H 0.02 0.58 7.20 -51.93 -0.37 0.20 15 26 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 15 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 28 H 0.19 2.50 8.06 -52.49 -0.42 2.07 15 29 H 0.20 1.09 8.06 -52.49 -0.42 0.67 15 LS Contribution 264.26 15.07 3.98 3.98 Total: -1.00 -34.22 264.26 -5.34 -39.57 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: -2.93 Total: -3.55 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.06 Total: -2.09 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.09 Total: -43.91 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.95 Total: -0.15 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.22 -5.34 -39.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259655822.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.409 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds