Wall clock time and date at job start Mon Mar 30 2020 04:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86797 * 120.00123 * 2 1 4 4 H 1.48506 * 109.47052 * 269.99834 * 3 2 1 5 5 H 1.48499 * 109.47455 * 29.99636 * 3 2 1 6 6 H 1.48500 * 109.47309 * 149.99837 * 3 2 1 7 7 C 1.39932 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 180.02562 * 7 2 1 9 9 C 1.39906 * 119.99688 * 359.97438 * 7 2 1 10 10 N 1.33911 * 120.61523 * 0.02571 * 9 7 2 11 11 C 1.31320 * 122.99415 * 179.97438 * 10 9 7 12 12 C 1.38548 * 123.32480 * 359.97438 * 11 10 9 13 13 C 1.39371 * 119.58916 * 0.03380 * 12 11 10 14 14 C 1.46938 * 120.60623 * 179.97438 * 9 7 2 15 15 C 1.37154 * 135.97504 * 0.02562 * 14 9 7 16 16 N 1.35665 * 109.66570 * 179.97438 * 15 14 9 17 17 N 1.40489 * 131.58090 * 180.02562 * 16 15 14 18 18 C 1.30865 * 119.94003 * 179.97438 * 17 16 15 19 19 N 1.32775 * 121.88406 * 359.97438 * 18 17 16 20 20 C 1.31873 * 121.57539 * 359.97438 * 19 18 17 21 21 C 1.37765 * 110.34798 * 0.02562 * 16 15 14 22 22 H 0.96999 * 119.99649 * 0.02562 * 1 2 3 23 23 H 1.08000 * 118.34022 * 179.97438 * 11 10 9 24 24 H 1.08001 * 120.20586 * 180.02562 * 12 11 10 25 25 H 1.08000 * 125.16498 * 0.26115 * 15 14 9 26 26 H 1.08003 * 119.05501 * 180.02562 * 18 17 16 27 27 H 1.07999 * 120.11389 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0880 -1.2118 0.0010 9 6 1.3084 -2.4234 0.0016 10 7 -0.0307 -2.4377 0.0016 11 6 -0.7340 -3.5467 0.0021 12 6 -0.1640 -4.8095 0.0022 13 6 1.2238 -4.9382 0.0024 14 6 2.0295 -3.7037 0.0016 15 6 3.3440 -4.0952 0.0012 16 7 3.4169 -5.4499 0.0021 17 7 4.5164 -6.3244 0.0026 18 6 4.3216 -7.6185 0.0039 19 7 3.1023 -8.1442 0.0053 20 6 2.0234 -7.3859 0.0060 21 6 2.1528 -5.9976 0.0025 22 1 -0.4849 0.8401 -0.0004 23 1 -1.8113 -3.4706 0.0025 24 1 -0.7912 -5.6888 0.0022 25 1 4.1921 -3.4266 0.0048 26 1 5.1771 -8.2777 0.0047 27 1 1.0429 -7.8387 0.0076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259661062.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:33 Heat of formation + Delta-G solvation = 123.852951 kcal Electronic energy + Delta-G solvation = -15834.445809 eV Core-core repulsion = 13172.530699 eV Total energy + Delta-G solvation = -2661.915109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.62447 -39.68951 -37.67468 -35.73542 -34.42717 -32.39099 -31.18095 -29.84381 -27.75810 -25.92374 -24.76275 -22.77579 -22.16185 -19.64808 -19.47352 -18.55667 -17.62685 -16.59728 -16.49521 -16.16546 -15.88135 -15.25920 -14.69011 -14.45847 -14.23648 -14.14816 -13.33549 -13.21148 -12.90102 -12.81867 -12.39819 -12.15149 -12.01042 -11.68793 -11.25489 -10.49018 -10.18542 -9.63215 -9.61019 -8.49988 -8.40713 -6.50439 -0.59256 0.02350 1.15130 1.20808 1.44462 1.53411 1.59517 1.63454 2.17237 2.54480 2.80015 3.26475 3.34540 3.79640 3.83748 3.93245 4.23556 4.36490 4.46130 4.68264 4.79126 4.93026 5.07128 5.19904 5.23494 5.54333 5.73393 5.83735 6.00578 6.16874 6.29589 6.45504 6.78907 7.21965 8.11725 8.25748 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.007059 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.326467 B = 3965.889102 C = 4704.373468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.383 4.383 8 H 0.111 0.889 9 C 0.269 3.731 10 N -0.557 5.557 11 C 0.158 3.842 12 C -0.337 4.337 13 C 0.018 3.982 14 C -0.258 4.258 15 C 0.117 3.883 16 N -0.271 5.271 17 N -0.381 5.381 18 C 0.298 3.702 19 N -0.614 5.614 20 C 0.281 3.719 21 C -0.182 4.182 22 H 0.292 0.708 23 H 0.142 0.858 24 H 0.124 0.876 25 H 0.194 0.806 26 H 0.251 0.749 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -3.037 0.029 4.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.172 1.172 7 C -0.413 4.413 8 H 0.129 0.871 9 C 0.142 3.858 10 N -0.273 5.273 11 C -0.005 4.005 12 C -0.363 4.363 13 C 0.005 3.995 14 C -0.268 4.268 15 C -0.032 4.032 16 N -0.031 5.031 17 N -0.198 5.198 18 C 0.001 3.999 19 N -0.336 5.336 20 C 0.105 3.895 21 C -0.288 4.288 22 H 0.103 0.897 23 H 0.159 0.841 24 H 0.142 0.858 25 H 0.210 0.790 26 H 0.266 0.734 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.309 -2.745 0.035 5.109 hybrid contribution -0.097 0.055 -0.013 0.113 sum 4.211 -2.690 0.022 4.997 Atomic orbital electron populations 1.70240 1.09279 1.30726 1.22822 1.27236 0.95868 1.05068 0.92932 0.84957 0.79132 0.74495 0.79866 1.18407 1.18965 1.17180 1.20163 0.96253 0.89945 1.34959 0.87149 1.19533 0.88246 0.89313 0.88722 1.68546 1.06149 1.27911 1.24674 1.22637 0.99746 0.88149 0.90001 1.20501 0.91468 0.98377 1.25945 1.18842 0.93928 0.90718 0.95997 1.21113 0.92571 0.95945 1.17198 1.21603 0.98001 0.79839 1.03779 1.45003 1.03606 1.05445 1.49089 1.76165 1.09746 1.04794 1.29136 1.26364 0.97280 0.88759 0.87535 1.68597 0.98460 1.38745 1.27791 1.23159 0.99796 0.86151 0.80407 1.19280 0.85854 0.95400 1.28232 0.89658 0.84109 0.85776 0.78952 0.73393 0.78223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -33.90 11.49 21.82 0.25 -33.65 15 2 C 0.02 0.71 5.49 85.25 0.47 1.18 15 3 Si 1.00 32.32 29.56 68.60 2.03 34.35 15 4 H -0.26 -8.20 7.11 99.48 0.71 -7.49 15 5 H -0.27 -8.28 7.11 99.48 0.71 -7.57 15 6 H -0.25 -7.68 7.11 99.48 0.71 -6.98 15 7 C -0.38 -18.22 9.11 23.08 0.21 -18.01 15 8 H 0.11 4.66 7.84 -2.91 -0.02 4.64 15 9 C 0.27 13.91 6.73 41.51 0.28 14.19 15 10 N -0.56 -29.32 7.82 -184.96 -1.45 -30.77 15 11 C 0.16 7.37 11.05 84.84 0.94 8.30 15 12 C -0.34 -14.85 10.13 22.62 0.23 -14.62 15 13 C 0.02 0.85 6.48 -19.93 -0.13 0.72 15 14 C -0.26 -12.52 6.35 -18.84 -0.12 -12.64 15 15 C 0.12 5.07 11.82 83.85 0.99 6.06 15 16 N -0.27 -11.60 3.94 -185.86 -0.73 -12.33 15 17 N -0.38 -14.32 11.97 -61.43 -0.74 -15.05 15 18 C 0.30 9.28 12.37 180.86 2.24 11.52 15 19 N -0.61 -20.30 10.41 -199.64 -2.08 -22.38 15 20 C 0.28 9.79 11.29 84.97 0.96 10.75 15 21 C -0.18 -7.72 6.88 39.15 0.27 -7.45 15 22 H 0.29 12.28 8.30 -92.71 -0.77 11.52 15 23 H 0.14 5.68 8.06 -2.91 -0.02 5.66 15 24 H 0.12 4.62 8.06 -2.91 -0.02 4.60 15 25 H 0.19 7.04 8.06 -2.91 -0.02 7.01 15 26 H 0.25 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.20 5.39 8.06 -2.91 -0.02 5.37 15 Total: -1.00 -62.92 250.64 4.83 -58.09 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 1.21 Total: 21.73 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 6.33 Total: 0.02 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.74 Total: -114.18 kcal Atomic # 14 Polarization: 32.32 SS G_CDS: 2.03 Total: 34.35 kcal Total: -62.92 4.83 -58.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259661062.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.939 kcal (2) G-P(sol) polarization free energy of solvation -62.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds