Wall clock time and date at job start Mon Mar 30 2020 03:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70942 * 125.58359 * 2 1 4 4 C 1.70772 * 91.13075 * 180.18275 * 3 2 1 5 5 N 1.28645 * 110.55695 * 359.82185 * 4 3 2 6 6 C 1.33561 * 115.76930 * 0.02562 * 5 4 3 7 7 C 1.47266 * 123.14317 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99792 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00144 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.46872 * 59.99743 * 17 15 13 19 19 H 1.48503 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46914 * 299.99916 * 17 15 13 21 21 H 1.08994 * 109.47072 * 270.13395 * 1 2 3 22 22 H 1.08995 * 109.47560 * 30.14340 * 1 2 3 23 23 H 1.09001 * 109.46924 * 150.13937 * 1 2 3 24 24 H 1.08000 * 124.72411 * 179.81771 * 4 3 2 25 25 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 26 26 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 27 27 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 28 28 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 29 29 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5017 1.3902 0.0000 4 6 3.9098 0.4241 -0.0054 5 7 3.6009 -0.8247 -0.0032 6 6 2.2939 -1.0995 0.0021 7 6 1.7596 -2.4718 0.0048 8 8 0.5575 -2.6564 0.0092 9 7 2.6029 -3.5233 0.0023 10 6 2.0715 -4.8885 0.0044 11 1 1.1533 -4.9218 -0.5821 12 6 1.7739 -5.3177 1.4425 13 6 3.0873 -5.8238 -0.5991 14 1 4.0342 -5.4398 -0.9488 15 6 2.8078 -7.1698 -0.7048 16 7 1.6550 -7.6375 -0.2785 17 14 4.0673 -8.3294 -1.4522 18 1 5.3177 -8.2843 -0.6523 19 1 3.5285 -9.7132 -1.4502 20 1 4.3571 -7.9125 -2.8477 21 1 -0.3633 0.0024 1.0276 22 1 -0.3634 0.8886 -0.5160 23 1 -0.3633 -0.8913 -0.5117 24 1 4.9193 0.8080 -0.0102 25 1 3.5617 -3.3760 -0.0008 26 1 2.6921 -5.2844 2.0290 27 1 1.3781 -6.3333 1.4439 28 1 1.0391 -4.6411 1.8790 29 1 1.4582 -8.5844 -0.3532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259696329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:14 Heat of formation + Delta-G solvation = -1.763509 kcal Electronic energy + Delta-G solvation = -14790.415952 eV Core-core repulsion = 12226.204904 eV Total energy + Delta-G solvation = -2564.211048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16186 -38.00230 -34.87580 -32.59649 -32.17809 -29.29844 -27.21733 -25.21956 -24.33245 -22.64896 -20.32066 -19.08314 -18.18300 -16.83447 -15.58664 -15.33042 -15.14858 -14.90715 -14.10328 -13.49687 -13.28021 -12.97841 -12.76500 -12.42454 -12.33561 -11.70931 -11.53307 -11.05868 -10.92874 -10.72021 -10.29780 -10.19881 -9.79816 -9.39653 -9.10510 -9.02692 -8.83915 -8.51792 -7.85636 -6.09186 -4.17950 0.63725 1.27004 1.66166 2.30481 3.29035 3.33390 3.35578 3.96187 4.05327 4.33249 4.50694 5.02444 5.10570 5.23024 5.35699 5.67135 5.87832 6.04002 6.37247 6.85452 7.00137 7.16911 7.44276 7.48028 7.64207 7.75336 7.95178 8.16975 8.70880 8.79818 9.11929 9.49073 10.96939 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.005793 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.448051 B = 4832.602622 C = 5263.717829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.184 4.184 3 S 0.170 5.830 4 C -0.007 4.007 5 N -0.433 5.433 6 C 0.004 3.996 7 C 0.577 3.423 8 O -0.547 6.547 9 N -0.686 5.686 10 C 0.263 3.737 11 H 0.050 0.950 12 C -0.147 4.147 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.201 0.799 25 H 0.398 0.602 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.015 0.985 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 16.933 1.032 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.307 4.307 3 S 0.424 5.576 4 C -0.307 4.307 5 N -0.147 5.147 6 C -0.130 4.130 7 C 0.359 3.641 8 O -0.427 6.427 9 N -0.333 5.333 10 C 0.161 3.839 11 H 0.068 0.932 12 C -0.205 4.205 13 C -0.571 4.571 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.128 0.872 24 H 0.218 0.782 25 H 0.232 0.768 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.602 17.180 1.052 17.287 hybrid contribution 1.080 -1.404 -0.345 1.805 sum 2.682 15.776 0.708 16.018 Atomic orbital electron populations 1.20528 0.85714 1.04496 1.03648 1.25550 1.03443 0.95715 1.06024 1.82680 0.98106 1.10440 1.66413 1.28269 1.04062 0.91623 1.06730 1.66968 1.16582 1.18320 1.12833 1.20833 0.87331 0.96672 1.08150 1.17068 0.86378 0.82552 0.78138 1.90696 1.14384 1.85011 1.52616 1.46430 1.09699 1.07279 1.69871 1.18821 0.95760 0.75134 0.94138 0.93174 1.22078 0.98191 1.03013 0.97239 1.21190 1.02276 0.92432 1.41242 0.92025 1.24878 0.95627 0.97981 0.95176 1.69889 1.21971 1.14503 1.45868 0.86488 0.81224 0.79570 0.79704 1.20131 1.21131 1.20162 0.90211 0.91692 0.87230 0.78199 0.76840 0.95403 0.89006 0.96614 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.64 36.00 0.35 -0.80 15 2 C -0.18 -2.72 6.40 -35.39 -0.23 -2.95 15 3 S 0.17 1.76 22.94 -107.50 -2.47 -0.70 15 4 C -0.01 -0.08 12.17 51.43 0.63 0.54 15 5 N -0.43 -7.02 10.12 -12.36 -0.13 -7.15 15 6 C 0.00 0.07 6.70 -84.52 -0.57 -0.49 15 7 C 0.58 12.70 7.76 -12.59 -0.10 12.60 15 8 O -0.55 -13.16 13.77 5.26 0.07 -13.09 15 9 N -0.69 -15.85 5.07 -56.06 -0.28 -16.14 15 10 C 0.26 6.99 2.56 -69.09 -0.18 6.81 15 11 H 0.05 1.50 7.58 -51.93 -0.39 1.11 15 12 C -0.15 -3.78 9.26 37.16 0.34 -3.43 15 13 C -0.53 -14.67 8.73 -34.44 -0.30 -14.97 15 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 15 C 0.07 1.83 5.30 -17.82 -0.09 1.73 15 16 N -0.88 -25.31 11.32 55.43 0.63 -24.68 15 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 15 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.11 1.79 6.00 -51.93 -0.31 1.48 15 24 H 0.20 1.52 8.06 -52.49 -0.42 1.09 15 25 H 0.40 8.59 8.06 -40.82 -0.33 8.26 15 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.09 2.53 6.07 -51.93 -0.32 2.21 15 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 15 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 266.98 15.07 4.02 4.02 Total: -1.00 -31.17 266.98 -6.32 -37.49 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.00 Total: 5.09 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.15 Total: -0.96 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.22 Total: -47.96 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.70 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.17 -6.32 -37.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.730 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds