Wall clock time and date at job start Mon Mar 30 2020 03:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70942 * 125.58359 * 2 1 4 4 C 1.70772 * 91.13075 * 180.18275 * 3 2 1 5 5 N 1.28645 * 110.55695 * 359.82185 * 4 3 2 6 6 C 1.33561 * 115.76930 * 0.02562 * 5 4 3 7 7 C 1.47266 * 123.14317 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99792 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00144 * 0.02562 * 7 6 5 10 10 C 1.46497 * 120.00376 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46725 * 35.00314 * 10 9 7 12 12 C 1.52997 * 109.47188 * 275.00479 * 10 9 7 13 13 C 1.50697 * 109.47081 * 155.00043 * 10 9 7 14 14 H 1.07999 * 120.00055 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99687 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00458 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99926 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.46872 * 59.99743 * 17 15 13 19 19 H 1.48503 * 109.47008 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46914 * 299.99916 * 17 15 13 21 21 H 1.08994 * 109.47072 * 270.13395 * 1 2 3 22 22 H 1.08995 * 109.47560 * 30.14340 * 1 2 3 23 23 H 1.09001 * 109.46924 * 150.13937 * 1 2 3 24 24 H 1.08000 * 124.72411 * 179.81771 * 4 3 2 25 25 H 0.97006 * 119.99702 * 0.02562 * 9 7 6 26 26 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 27 27 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 28 28 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 29 29 H 0.96999 * 120.00480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5017 1.3902 0.0000 4 6 3.9098 0.4241 -0.0054 5 7 3.6009 -0.8247 -0.0032 6 6 2.2939 -1.0995 0.0021 7 6 1.7596 -2.4718 0.0048 8 8 0.5575 -2.6564 0.0092 9 7 2.6029 -3.5233 0.0023 10 6 2.0715 -4.8885 0.0044 11 1 1.1533 -4.9218 -0.5821 12 6 1.7739 -5.3177 1.4425 13 6 3.0873 -5.8238 -0.5991 14 1 4.0342 -5.4398 -0.9488 15 6 2.8078 -7.1698 -0.7048 16 7 1.6550 -7.6375 -0.2785 17 14 4.0673 -8.3294 -1.4522 18 1 5.3177 -8.2843 -0.6523 19 1 3.5285 -9.7132 -1.4502 20 1 4.3571 -7.9125 -2.8477 21 1 -0.3633 0.0024 1.0276 22 1 -0.3634 0.8886 -0.5160 23 1 -0.3633 -0.8913 -0.5117 24 1 4.9193 0.8080 -0.0102 25 1 3.5617 -3.3760 -0.0008 26 1 2.6921 -5.2844 2.0290 27 1 1.3781 -6.3333 1.4439 28 1 1.0391 -4.6411 1.8790 29 1 1.4582 -8.5844 -0.3532 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259696329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:14 Heat of formation + Delta-G solvation = -24.503059 kcal Electronic energy + Delta-G solvation = -14791.402013 eV Core-core repulsion = 12226.204904 eV Total energy + Delta-G solvation = -2565.197109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48821 -39.56006 -36.81871 -34.40583 -33.51513 -31.21111 -28.52159 -27.36801 -25.43209 -24.16882 -22.14771 -20.76526 -19.30266 -18.57482 -17.32011 -16.98392 -16.48739 -16.43569 -15.69099 -15.09347 -14.85158 -14.40372 -14.09899 -13.82837 -13.73062 -13.54440 -12.98877 -12.89445 -12.76499 -12.68146 -12.30350 -12.15924 -11.16501 -10.92591 -10.68607 -10.60578 -10.36041 -10.03506 -9.66700 -8.20056 -6.37910 -0.43644 0.30680 0.66045 1.05451 1.42978 1.45788 1.53774 2.33827 2.42032 2.61690 3.09771 3.26533 3.86250 4.02654 4.23235 4.64316 4.68140 4.80710 4.87411 4.88639 5.03918 5.22237 5.39883 5.57164 5.64053 5.84635 6.05236 6.46834 6.67535 6.92704 7.26491 7.43446 8.86363 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.005793 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.448051 B = 4832.602622 C = 5263.717829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.203 4.203 3 S 0.290 5.710 4 C -0.008 4.008 5 N -0.472 5.472 6 C -0.032 4.032 7 C 0.570 3.430 8 O -0.580 6.580 9 N -0.691 5.691 10 C 0.270 3.730 11 H 0.004 0.996 12 C -0.132 4.132 13 C -0.552 4.552 14 H 0.067 0.933 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.271 1.271 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.073 0.927 24 H 0.243 0.757 25 H 0.405 0.595 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 19.330 0.826 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.328 4.328 3 S 0.545 5.455 4 C -0.307 4.307 5 N -0.187 5.187 6 C -0.166 4.166 7 C 0.355 3.645 8 O -0.462 6.462 9 N -0.338 5.338 10 C 0.167 3.833 11 H 0.022 0.978 12 C -0.190 4.190 13 C -0.590 4.590 14 H 0.086 0.914 15 C -0.184 4.184 16 N -0.553 5.553 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.196 1.196 21 H 0.103 0.897 22 H 0.119 0.881 23 H 0.092 0.908 24 H 0.259 0.741 25 H 0.240 0.760 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.464 19.624 0.851 19.946 hybrid contribution 0.469 -1.932 -0.278 2.008 sum 3.933 17.692 0.573 18.133 Atomic orbital electron populations 1.20512 0.85431 1.04489 1.03967 1.25932 1.04551 0.97738 1.04552 1.82265 0.94438 1.05635 1.63130 1.29027 1.06838 0.90792 1.04001 1.66914 1.15693 1.20924 1.15164 1.20257 0.89011 0.94847 1.12471 1.17709 0.85909 0.84197 0.76681 1.90667 1.15737 1.86090 1.53727 1.46218 1.10161 1.06443 1.70955 1.18447 0.94048 0.77254 0.93591 0.97784 1.21889 0.98335 1.01673 0.97152 1.21471 1.02598 0.93108 1.41810 0.91450 1.25799 0.97611 0.99593 0.95350 1.70030 1.23778 1.14971 1.46571 0.85360 0.78729 0.77123 0.78900 1.18963 1.20654 1.19618 0.89695 0.88124 0.90844 0.74090 0.76028 0.94462 0.90939 0.96751 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 9.64 71.23 0.69 -1.55 15 2 C -0.20 -5.70 6.40 24.99 0.16 -5.54 15 3 S 0.29 4.76 22.94 -56.49 -1.30 3.47 15 4 C -0.01 -0.15 12.17 130.71 1.59 1.44 15 5 N -0.47 -14.68 10.12 -193.02 -1.95 -16.63 15 6 C -0.03 -1.16 6.70 40.56 0.27 -0.88 15 7 C 0.57 26.24 7.76 86.62 0.67 26.91 15 8 O -0.58 -29.66 13.77 -4.10 -0.06 -29.72 15 9 N -0.69 -33.27 5.07 -449.54 -2.28 -35.55 15 10 C 0.27 15.02 2.56 44.24 0.11 15.14 15 11 H 0.00 0.27 7.58 -2.39 -0.02 0.26 15 12 C -0.13 -7.07 9.26 71.98 0.67 -6.41 15 13 C -0.55 -31.10 8.73 25.60 0.22 -30.87 15 14 H 0.07 3.63 7.74 -2.91 -0.02 3.60 15 15 C 0.02 0.93 5.30 84.66 0.45 1.38 15 16 N -0.92 -53.74 11.32 21.45 0.24 -53.50 15 17 Si 0.97 43.42 29.54 68.60 2.03 45.45 15 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 15 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 21 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.07 2.50 6.00 -2.39 -0.01 2.48 15 24 H 0.24 2.42 8.06 -2.91 -0.02 2.39 15 25 H 0.40 18.04 8.06 -92.70 -0.75 17.30 15 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.07 4.16 6.07 -2.39 -0.01 4.15 15 28 H 0.01 0.71 8.14 -2.38 -0.02 0.69 15 29 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -71.38 266.98 1.95 -69.43 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.43 Total: 17.43 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 4.83 Total: -0.38 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.99 Total: -105.68 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.06 Total: -29.72 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.30 Total: 3.47 kcal Total: -71.38 1.95 -69.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259696329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.927 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds