Wall clock time and date at job start Mon Mar 30 2020 03:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28653 * 124.71866 * 2 1 4 4 C 1.33552 * 115.76712 * 180.02562 * 3 2 1 5 5 C 1.47266 * 123.14299 * 180.02562 * 4 3 2 6 6 O 1.21635 * 120.00009 * 179.97438 * 5 4 3 7 7 N 1.34771 * 119.99929 * 359.95753 * 5 4 3 8 8 C 1.46502 * 119.99972 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.46883 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00248 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99527 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99434 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47550 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46988 * 120.00474 * 13 11 9 16 16 H 1.48498 * 109.47356 * 239.99810 * 13 11 9 17 17 C 1.35211 * 113.71727 * 359.97438 * 4 3 2 18 18 C 1.50703 * 125.58630 * 179.97438 * 17 4 3 19 19 S 1.70765 * 124.72340 * 180.28317 * 2 1 3 20 20 H 1.09001 * 109.47234 * 90.00023 * 1 2 3 21 21 H 1.08997 * 109.46821 * 210.00171 * 1 2 3 22 22 H 1.08999 * 109.47100 * 330.00245 * 1 2 3 23 23 H 0.97002 * 120.00449 * 0.02562 * 7 5 4 24 24 H 1.08995 * 109.47359 * 300.00080 * 8 7 5 25 25 H 1.08999 * 109.47258 * 60.00799 * 8 7 5 26 26 H 0.97003 * 120.00383 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.47152 * 90.00172 * 18 17 4 28 28 H 1.09001 * 109.46980 * 330.00273 * 18 17 4 29 29 H 1.09004 * 109.47113 * 210.00254 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5590 0.8497 -0.0005 5 6 4.5462 1.9424 -0.0001 6 8 5.7356 1.6876 -0.0001 7 7 4.1318 3.2249 0.0001 8 6 5.1139 4.3120 0.0011 9 6 4.3963 5.6372 0.0017 10 1 3.3167 5.6667 0.0018 11 6 5.1181 6.8120 0.0022 12 7 6.4327 6.7761 0.0016 13 14 4.2285 8.4546 0.0022 14 1 2.7617 8.2232 0.0023 15 1 4.6081 9.2230 1.2150 16 1 4.6088 9.2235 -1.2100 17 6 3.9036 -0.4578 -0.0004 18 6 5.3122 -0.9935 -0.0015 19 16 2.4797 -1.4035 -0.0069 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 3.1834 3.4282 0.0003 24 1 5.7382 4.2369 0.8914 25 1 5.7393 4.2375 -0.8885 26 1 6.9405 7.6026 0.0015 27 1 5.6527 -1.1223 1.0259 28 1 5.9677 -0.2908 -0.5161 29 1 5.3351 -1.9546 -0.5151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259758101.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:18 Heat of formation + Delta-G solvation = -33.946466 kcal Electronic energy + Delta-G solvation = -14463.234876 eV Core-core repulsion = 11897.628271 eV Total energy + Delta-G solvation = -2565.606605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55686 -39.61167 -36.31388 -34.46501 -34.17867 -31.25928 -29.64280 -27.30851 -25.60141 -24.12335 -22.21240 -20.66105 -19.54797 -18.57286 -17.42373 -16.84870 -16.77227 -16.26397 -15.59203 -15.26851 -14.78934 -14.32364 -14.26978 -14.07962 -13.90563 -13.58853 -13.09388 -13.01824 -12.89721 -12.77138 -12.72701 -12.25580 -11.50762 -11.00592 -10.85127 -10.70158 -10.36999 -10.04676 -9.64991 -8.32714 -6.49545 -0.50448 0.22465 0.57453 0.95467 1.40626 1.42298 1.56287 2.29699 2.32483 2.52867 3.01723 3.07781 3.78794 3.95755 4.04585 4.55010 4.61620 4.74425 4.77594 4.80933 5.02713 5.17035 5.18626 5.22984 5.43741 5.61328 5.79023 6.43674 6.59106 6.84074 7.16345 7.32076 8.79805 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035936 B = 0.005576 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.969202 B = 5020.260313 C = 5773.479169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 N -0.475 5.475 4 C -0.026 4.026 5 C 0.569 3.431 6 O -0.580 6.580 7 N -0.693 5.693 8 C 0.267 3.733 9 C -0.560 4.560 10 H 0.077 0.923 11 C 0.006 3.994 12 N -0.928 5.928 13 Si 0.987 3.013 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.205 4.205 18 C -0.085 4.085 19 S 0.288 5.712 20 H 0.102 0.898 21 H 0.112 0.888 22 H 0.086 0.914 23 H 0.408 0.592 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.271 0.729 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -18.139 -0.046 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.269 4.269 3 N -0.191 5.191 4 C -0.159 4.159 5 C 0.354 3.646 6 O -0.462 6.462 7 N -0.341 5.341 8 C 0.144 3.856 9 C -0.597 4.597 10 H 0.095 0.905 11 C -0.193 4.193 12 N -0.566 5.566 13 Si 0.810 3.190 14 H -0.181 1.181 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.330 4.330 18 C -0.143 4.143 19 S 0.546 5.454 20 H 0.121 0.879 21 H 0.130 0.870 22 H 0.105 0.895 23 H 0.243 0.757 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.011 -18.684 -0.055 22.768 hybrid contribution 0.614 2.057 0.019 2.147 sum -12.397 -16.627 -0.036 20.740 Atomic orbital electron populations 1.20666 0.81839 1.05658 1.05400 1.27761 1.03965 0.91584 1.03579 1.66892 1.02671 1.33396 1.16138 1.20097 0.90284 0.93235 1.12293 1.17746 0.87197 0.82870 0.76770 1.90673 1.17743 1.84155 1.53616 1.46135 1.11582 1.05220 1.71115 1.18658 0.87894 0.84479 0.94535 1.21591 0.94148 0.90602 1.53382 0.90472 1.26059 0.95655 1.04022 0.93609 1.70129 1.07224 1.29576 1.49686 0.85077 0.78910 0.77056 0.77968 1.18055 1.20044 1.20036 1.25906 1.05501 0.96559 1.04988 1.20526 0.87917 1.01867 1.04033 1.82123 0.90765 1.08339 1.64171 0.87949 0.86951 0.89491 0.75658 0.98831 0.98821 0.92051 0.89643 0.90759 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.46 71.24 0.74 -0.24 15 2 C 0.01 0.24 7.34 88.57 0.65 0.89 15 3 N -0.47 -15.64 10.12 -180.84 -1.83 -17.47 15 4 C -0.03 -0.95 6.70 40.56 0.27 -0.68 15 5 C 0.57 26.96 7.80 86.62 0.68 27.64 15 6 O -0.58 -30.35 14.10 -4.14 -0.06 -30.41 15 7 N -0.69 -34.55 5.54 -470.25 -2.61 -37.16 15 8 C 0.27 15.73 5.43 85.63 0.46 16.19 15 9 C -0.56 -32.51 9.28 25.60 0.24 -32.27 15 10 H 0.08 4.19 7.60 -2.91 -0.02 4.17 15 11 C 0.01 0.37 5.46 84.66 0.46 0.83 15 12 N -0.93 -57.23 13.29 21.45 0.28 -56.95 15 13 Si 0.99 43.96 29.54 68.60 2.03 45.98 15 14 H -0.26 -10.76 7.11 99.48 0.71 -10.06 15 15 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 17 C -0.20 -6.03 6.40 24.99 0.16 -5.87 15 18 C -0.08 -2.28 9.64 71.24 0.69 -1.60 15 19 S 0.29 5.32 22.89 -56.49 -1.29 4.03 15 20 H 0.10 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.11 0.73 8.14 -2.39 -0.02 0.71 15 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.41 18.69 7.84 -92.71 -0.73 17.96 15 24 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 15 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.07 2.56 6.00 -2.39 -0.01 2.55 15 29 H 0.10 1.90 8.14 -2.38 -0.02 1.88 15 Total: -1.00 -75.32 272.05 1.33 -74.00 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.45 Total: 13.09 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 4.35 Total: 4.89 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.15 Total: -111.57 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.06 Total: -30.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.29 Total: 4.03 kcal Total: -75.32 1.33 -74.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758101.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.051 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds