Wall clock time and date at job start Mon Mar 30 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86797 * 120.00483 * 2 1 4 4 H 1.48505 * 109.46922 * 90.00073 * 3 2 1 5 5 H 1.48497 * 109.47239 * 209.99784 * 3 2 1 6 6 H 1.48498 * 109.46908 * 329.99955 * 3 2 1 7 7 C 1.40085 * 119.99526 * 180.27357 * 2 1 3 8 8 H 1.07997 * 119.99948 * 15.49920 * 7 2 1 9 9 C 1.40321 * 119.99839 * 195.50078 * 7 2 1 10 10 N 1.33932 * 120.44719 * 8.89458 * 9 7 2 11 11 C 1.31383 * 122.03820 * 179.97438 * 10 9 7 12 12 C 1.38763 * 122.32825 * 0.02562 * 11 10 9 13 13 C 1.38570 * 119.89052 * 359.97438 * 12 11 10 14 14 C 1.41322 * 118.62748 * 359.74127 * 13 12 11 15 15 N 1.33217 * 107.59716 * 179.79613 * 14 13 12 16 16 C 1.33064 * 109.90278 * 0.40314 * 15 14 13 17 17 N 1.33975 * 130.87875 * 179.69495 * 16 15 14 18 18 C 1.31377 * 121.12057 * 180.02562 * 17 16 15 19 19 C 1.39990 * 120.31719 * 0.04141 * 18 17 16 20 20 C 1.35808 * 119.22034 * 359.97438 * 19 18 17 21 21 N 1.36283 * 119.20461 * 359.97438 * 20 19 18 22 22 H 0.96998 * 120.00497 * 174.80055 * 1 2 3 23 23 H 1.08005 * 118.83781 * 180.02562 * 11 10 9 24 24 H 1.08001 * 120.05178 * 180.02562 * 12 11 10 25 25 H 1.07998 * 119.83673 * 180.02562 * 18 17 16 26 26 H 1.08005 * 120.38610 * 180.02562 * 19 18 17 27 27 H 1.08000 * 120.39288 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 2.4894 2.0463 1.4001 5 1 3.5394 1.4400 -0.7000 6 1 1.4393 2.6526 -0.7000 7 6 2.0080 -1.2132 -0.0058 8 1 1.4974 -2.1302 -0.2601 9 6 3.3730 -1.2369 0.3189 10 7 3.9739 -0.1435 0.8056 11 6 5.2494 -0.1309 1.1204 12 6 6.0617 -1.2460 0.9707 13 6 5.5306 -2.4256 0.4742 14 6 4.1590 -2.4608 0.1355 15 7 3.8873 -3.6838 -0.3175 16 6 4.9859 -4.4338 -0.2838 17 7 5.1861 -5.7118 -0.6323 18 6 6.3702 -6.2694 -0.5175 19 6 7.4534 -5.5326 -0.0241 20 6 7.2654 -4.2360 0.3334 21 7 6.0267 -3.6831 0.2027 22 1 -0.4851 -0.8365 -0.0761 23 1 5.6811 0.7795 1.5094 24 1 7.1059 -1.1947 1.2416 25 1 6.5083 -7.3012 -0.8050 26 1 8.4274 -5.9898 0.0703 27 1 8.0878 -3.6501 0.7166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259797701.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:01 Heat of formation + Delta-G solvation = 112.117607 kcal Electronic energy + Delta-G solvation = -16017.391663 eV Core-core repulsion = 13354.967671 eV Total energy + Delta-G solvation = -2662.423992 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15798 -38.52119 -36.40007 -34.35790 -33.90292 -31.06527 -30.09999 -28.89807 -26.02946 -24.40694 -22.96458 -21.97121 -20.75784 -19.12655 -17.55539 -17.17983 -16.88005 -15.69200 -15.09756 -14.97483 -14.64047 -14.04270 -13.28818 -12.98994 -12.74430 -12.67146 -12.50828 -11.75731 -11.63973 -11.28281 -10.95460 -10.22775 -10.11619 -9.78782 -9.45696 -9.14927 -8.89762 -8.38947 -8.07477 -7.67511 -7.22026 -4.93987 0.85980 1.35894 2.38449 2.87273 2.95666 3.40679 3.50142 3.79809 4.05402 4.14080 4.21354 4.32361 4.59988 4.91576 5.04356 5.24819 5.38353 5.64358 5.68881 5.72863 5.90996 6.19880 6.38963 6.54128 6.93269 7.04123 7.06956 7.20411 7.41530 7.71286 7.86260 8.11673 8.22991 8.66885 9.31083 9.55403 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.007719 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.275210 B = 3626.404106 C = 4240.012453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.040 3.960 3 Si 1.144 2.856 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.321 1.321 7 C -0.387 4.387 8 H 0.100 0.900 9 C 0.281 3.719 10 N -0.593 5.593 11 C 0.188 3.812 12 C -0.336 4.336 13 C 0.092 3.908 14 C -0.006 4.006 15 N -0.423 5.423 16 C 0.330 3.670 17 N -0.430 5.430 18 C 0.141 3.859 19 C -0.235 4.235 20 C 0.130 3.870 21 N -0.423 5.423 22 H 0.294 0.706 23 H 0.137 0.863 24 H 0.102 0.898 25 H 0.171 0.829 26 H 0.153 0.847 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 -4.412 0.895 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.187 4.187 3 Si 0.974 3.026 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.253 1.253 7 C -0.417 4.417 8 H 0.118 0.882 9 C 0.156 3.844 10 N -0.314 5.314 11 C 0.027 3.973 12 C -0.364 4.364 13 C -0.021 4.021 14 C -0.139 4.139 15 N -0.144 5.144 16 C -0.016 4.016 17 N -0.141 5.141 18 C -0.048 4.048 19 C -0.260 4.260 20 C -0.002 4.002 21 N -0.107 5.107 22 H 0.106 0.894 23 H 0.155 0.845 24 H 0.120 0.880 25 H 0.188 0.812 26 H 0.171 0.829 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.535 -2.693 0.482 9.920 hybrid contribution 2.360 -2.199 0.492 3.263 sum 11.895 -4.893 0.973 12.899 Atomic orbital electron populations 1.70602 1.08339 1.33991 1.24788 1.28201 0.95180 1.06543 0.88743 0.82135 0.72859 0.69046 0.78544 1.20379 1.19936 1.25350 1.21072 0.92742 0.97813 1.30066 0.88226 1.18895 0.92260 0.83154 0.90055 1.67004 1.11845 1.26352 1.26244 1.21802 0.88894 0.95397 0.91165 1.19651 1.00334 0.92376 1.24077 1.18699 0.94765 0.84879 1.03766 1.20937 0.91560 0.93679 1.07683 1.69865 1.22317 1.02535 1.19668 1.21515 0.83960 0.89776 1.06312 1.67643 1.24218 1.06088 1.16172 1.22924 0.86819 1.00020 0.95063 1.21492 1.02170 0.93828 1.08552 1.21990 0.87116 0.94811 0.96286 1.43218 1.09356 1.11530 1.46609 0.89429 0.84517 0.87952 0.81199 0.82931 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.14 13.65 55.56 0.76 -18.38 15 2 C 0.04 1.01 5.52 -17.31 -0.10 0.92 15 3 Si 1.14 25.83 25.97 -169.99 -4.41 21.41 15 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.27 -6.22 6.52 56.52 0.37 -5.85 15 6 H -0.32 -7.06 7.11 56.52 0.40 -6.66 15 7 C -0.39 -10.32 9.54 -38.11 -0.36 -10.68 15 8 H 0.10 2.75 8.06 -52.49 -0.42 2.33 15 9 C 0.28 7.41 6.43 -82.79 -0.53 6.88 15 10 N -0.59 -14.53 5.05 -9.73 -0.05 -14.57 15 11 C 0.19 3.97 11.11 -17.55 -0.19 3.77 15 12 C -0.34 -6.95 10.09 -39.27 -0.40 -7.35 15 13 C 0.09 2.12 7.12 -83.85 -0.60 1.52 15 14 C -0.01 -0.16 7.22 -82.72 -0.60 -0.76 15 15 N -0.42 -11.17 11.27 -10.35 -0.12 -11.28 15 16 C 0.33 7.64 8.86 -321.81 -2.85 4.78 15 17 N -0.43 -8.53 10.47 -13.60 -0.14 -8.67 15 18 C 0.14 1.96 11.27 -17.09 -0.19 1.77 15 19 C -0.24 -2.81 10.07 -39.80 -0.40 -3.21 15 20 C 0.13 1.93 11.07 -16.44 -0.18 1.75 15 21 N -0.42 -8.78 2.97 -61.82 -0.18 -8.96 15 22 H 0.29 7.10 8.73 -40.82 -0.36 6.74 15 23 H 0.14 2.32 8.06 -52.48 -0.42 1.90 15 24 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.17 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.15 1.11 8.06 -52.48 -0.42 0.68 15 27 H 0.16 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 245.48 15.07 3.70 3.70 Total: -1.00 -31.54 245.48 -8.57 -40.11 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -1.72 Total: -2.73 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -6.40 Total: -0.61 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.27 Total: -61.88 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -4.41 Total: 21.41 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.54 -8.57 -40.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259797701.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.227 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds