Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30592 * 1 3 3 Si 1.86797 * 119.99808 * 2 1 4 4 H 1.48503 * 109.47245 * 240.00075 * 3 2 1 5 5 H 1.48500 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47341 * 120.00150 * 3 2 1 7 7 C 1.40356 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99628 * 179.97438 * 7 2 1 9 9 C 1.40316 * 119.99635 * 359.97438 * 7 2 1 10 10 N 1.33581 * 120.44843 * 0.02729 * 9 7 2 11 11 C 1.31615 * 122.55998 * 179.67244 * 10 9 7 12 12 C 1.38070 * 122.54087 * 0.61359 * 11 10 9 13 13 C 1.40662 * 119.49780 * 359.40190 * 12 11 10 14 14 C 1.40239 * 122.03640 * 180.25107 * 13 12 11 15 15 C 1.39017 * 117.69162 * 180.02562 * 14 13 12 16 16 N 1.35850 * 133.41026 * 179.97438 * 15 14 13 17 17 C 1.30028 * 109.49696 * 180.02562 * 16 15 14 18 18 N 1.36220 * 110.28757 * 359.97438 * 17 16 15 19 19 H 0.97001 * 126.24308 * 179.97438 * 18 17 16 20 20 C 1.37863 * 107.52616 * 0.02562 * 18 17 16 21 21 N 1.32075 * 133.13495 * 179.97438 * 20 18 17 22 22 C 1.32461 * 121.45126 * 180.02562 * 21 20 18 23 23 H 0.96998 * 120.00488 * 0.02562 * 1 2 3 24 24 H 1.08001 * 118.73023 * 180.29646 * 11 10 9 25 25 H 1.08002 * 120.25368 * 179.68733 * 12 11 10 26 26 H 1.08004 * 121.15173 * 0.02562 * 14 13 12 27 27 H 1.08006 * 124.85831 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0936 1.6965 -1.2125 5 1 1.2748 2.7464 -0.0006 6 1 3.0936 1.6965 1.2124 7 6 2.0077 -1.2155 -0.0005 8 1 3.0877 -1.2154 -0.0010 9 6 1.3061 -2.4306 -0.0005 10 7 -0.0297 -2.4410 -0.0006 11 6 -0.7293 -3.5558 -0.0069 12 6 -0.1383 -4.8036 -0.0016 13 6 1.2646 -4.9055 -0.0017 14 6 1.9204 -6.1451 -0.0016 15 6 3.3106 -6.1405 -0.0011 16 7 4.2474 -7.1243 -0.0005 17 6 5.4343 -6.5933 0.0003 18 7 5.3437 -5.2341 -0.0004 19 1 6.0861 -4.6099 0.0003 20 6 4.0043 -4.9074 -0.0011 21 7 3.3555 -3.7570 -0.0014 22 6 2.0317 -3.7101 -0.0016 23 1 -0.4851 0.8400 -0.0004 24 1 -1.8074 -3.4921 -0.0114 25 1 -0.7485 -5.6947 -0.0020 26 1 1.3647 -7.0712 -0.0019 27 1 6.3597 -7.1502 0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810433.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = 85.428862 kcal Electronic energy + Delta-G solvation = -15904.285348 eV Core-core repulsion = 13240.704045 eV Total energy + Delta-G solvation = -2663.581303 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.97770 -40.31284 -37.29841 -35.86517 -34.52834 -32.87918 -30.97951 -30.30977 -27.79532 -25.45708 -24.17051 -22.85455 -22.22917 -20.31799 -19.29371 -18.79160 -17.72106 -16.89186 -16.46449 -16.26989 -15.95562 -15.04398 -14.63457 -14.46428 -14.15969 -14.11098 -13.23999 -13.12022 -13.07220 -12.59014 -12.55594 -12.09091 -12.05246 -11.69765 -11.29067 -10.35188 -10.13875 -9.58197 -9.45628 -8.81042 -8.54512 -6.60028 -0.46547 0.28198 1.10207 1.38625 1.54009 1.58459 1.82555 1.98353 2.13931 2.49487 2.85237 3.33065 3.61632 3.83569 3.88493 4.06751 4.29466 4.36908 4.47564 4.80218 4.91211 4.97017 5.12810 5.16614 5.36973 5.55607 5.87176 5.97052 6.11786 6.33821 6.41720 6.66723 6.87398 7.17430 8.06440 8.20488 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.028271 B = 0.008176 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.169827 B = 3424.041945 C = 4404.369480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.009 3.991 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.257 1.257 6 H -0.255 1.255 7 C -0.355 4.355 8 H 0.105 0.895 9 C 0.233 3.767 10 N -0.563 5.563 11 C 0.148 3.852 12 C -0.365 4.365 13 C -0.032 4.032 14 C -0.106 4.106 15 C 0.016 3.984 16 N -0.544 5.544 17 C 0.314 3.686 18 N -0.592 5.592 19 H 0.439 0.561 20 C 0.179 3.821 21 N -0.461 5.461 22 C 0.053 3.947 23 H 0.295 0.705 24 H 0.142 0.858 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -2.771 -0.007 9.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.218 4.218 3 Si 0.819 3.181 4 H -0.179 1.179 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.385 4.385 8 H 0.123 0.877 9 C 0.104 3.896 10 N -0.280 5.280 11 C -0.010 4.010 12 C -0.391 4.391 13 C -0.040 4.040 14 C -0.135 4.135 15 C -0.100 4.100 16 N -0.266 5.266 17 C 0.026 3.974 18 N -0.212 5.212 19 H 0.281 0.719 20 C -0.063 4.063 21 N -0.174 5.174 22 C -0.088 4.088 23 H 0.107 0.893 24 H 0.160 0.840 25 H 0.141 0.859 26 H 0.162 0.838 27 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 8.762 -1.959 -0.004 8.979 hybrid contribution 0.358 -0.083 -0.003 0.367 sum 9.120 -2.042 -0.007 9.346 Atomic orbital electron populations 1.70120 1.09348 1.31114 1.21480 1.27395 0.95985 1.05105 0.93319 0.84967 0.78708 0.73896 0.80569 1.17878 1.18107 1.17868 1.20325 0.96071 0.89825 1.32253 0.87741 1.20083 0.88619 0.89691 0.91166 1.68634 1.05307 1.27572 1.26513 1.22612 0.99808 0.88438 0.90102 1.21130 0.92094 0.98522 1.27333 1.18618 0.95715 0.92414 0.97212 1.20565 0.90697 0.97125 1.05121 1.19836 0.94796 0.90745 1.04661 1.70495 0.98985 1.31154 1.26010 1.26638 0.99531 0.79143 0.92093 1.42704 1.04138 1.09402 1.64984 0.71855 1.19394 0.87523 0.91179 1.08179 1.66058 1.09726 1.27313 1.14322 1.21155 0.87535 0.95611 1.04502 0.89298 0.84046 0.85929 0.83843 0.70054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -34.84 11.49 21.90 0.25 -34.59 15 2 C 0.01 0.44 5.50 85.39 0.47 0.91 15 3 Si 1.00 34.38 29.56 68.60 2.03 36.40 15 4 H -0.25 -8.50 7.11 99.48 0.71 -7.80 15 5 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 6 H -0.25 -8.50 7.11 99.48 0.71 -7.79 15 7 C -0.35 -18.61 9.00 23.29 0.21 -18.40 15 8 H 0.10 5.24 7.44 -2.91 -0.02 5.22 15 9 C 0.23 13.10 6.73 41.71 0.28 13.38 15 10 N -0.56 -31.46 7.85 -184.90 -1.45 -32.91 15 11 C 0.15 7.36 11.08 84.69 0.94 8.30 15 12 C -0.37 -17.47 9.90 22.82 0.23 -17.25 15 13 C -0.03 -1.64 5.75 -21.26 -0.12 -1.76 15 14 C -0.11 -4.76 10.03 22.94 0.23 -4.53 15 15 C 0.02 0.70 7.21 39.51 0.28 0.99 15 16 N -0.54 -18.83 11.28 -191.66 -2.16 -20.99 15 17 C 0.31 7.29 12.96 180.02 2.33 9.63 15 18 N -0.59 -16.56 6.21 -195.24 -1.21 -17.77 15 19 H 0.44 8.87 8.96 -92.71 -0.83 8.04 15 20 C 0.18 7.53 8.43 134.13 1.13 8.66 15 21 N -0.46 -22.77 9.64 -180.54 -1.74 -24.51 15 22 C 0.05 2.86 6.79 42.32 0.29 3.15 15 23 H 0.30 12.82 8.29 -92.71 -0.77 12.06 15 24 H 0.14 6.10 8.06 -2.91 -0.02 6.08 15 25 H 0.12 5.10 8.06 -2.91 -0.02 5.08 15 26 H 0.14 5.74 8.06 -2.91 -0.02 5.71 15 27 H 0.28 2.20 8.06 -2.91 -0.02 2.18 15 Total: -1.00 -72.32 247.67 2.39 -69.93 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.41 Total: 21.34 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.27 Total: 3.10 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -6.32 Total: -130.77 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.40 kcal Total: -72.32 2.39 -69.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810433.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.360 kcal (2) G-P(sol) polarization free energy of solvation -72.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds