Wall clock time and date at job start Mon Mar 30 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.33394 * 125.20470 * 89.99761 * 12 11 10 14 14 C 1.38419 * 114.92228 * 179.97438 * 13 12 11 15 15 C 1.33390 * 114.92343 * 0.02562 * 14 13 12 16 16 S 1.75882 * 125.20550 * 269.69377 * 12 11 10 17 17 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 18 18 N 1.34774 * 119.99870 * 180.02562 * 17 10 9 19 19 O 1.21589 * 120.00259 * 0.02562 * 17 10 9 20 20 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 22 22 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 23 23 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 24 24 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 25 25 H 1.08002 * 122.53800 * 359.96101 * 13 12 11 26 26 H 1.08001 * 122.53995 * 180.02562 * 14 13 12 27 27 H 1.07997 * 125.20331 * 180.02562 * 15 14 13 28 28 H 0.97000 * 120.00335 * 359.97438 * 18 17 10 29 29 H 0.97006 * 120.00168 * 180.02562 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2693 12 6 1.7627 -5.2835 1.7043 13 6 1.9084 -6.5695 1.3813 14 6 0.9412 -7.4139 1.8985 15 6 0.0097 -6.8137 2.6411 16 16 0.3414 -5.0883 2.7218 17 6 2.6413 -4.1247 -1.1666 18 7 3.5168 -5.1493 -1.1666 19 8 2.2466 -3.6624 -2.2196 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6243 -2.5567 0.8903 23 1 3.6888 -4.5591 1.1390 24 1 2.6870 -3.3876 2.0289 25 1 2.7194 -6.9249 0.7630 26 1 0.9408 -8.4782 1.7147 27 1 -0.8183 -7.3118 3.1233 28 1 3.8320 -5.5180 -0.3265 29 1 3.8324 -5.5178 -2.0066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259852713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:10 Heat of formation + Delta-G solvation = 7.508892 kcal Electronic energy + Delta-G solvation = -14955.422556 eV Core-core repulsion = 12391.613590 eV Total energy + Delta-G solvation = -2563.808966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.33839 -37.54641 -34.91376 -33.26067 -32.22032 -30.18796 -27.15860 -25.66579 -22.97153 -22.84449 -19.59392 -18.90857 -17.67404 -16.99688 -16.36588 -16.14077 -15.30152 -14.69251 -14.27151 -13.78082 -13.36460 -12.86638 -12.74342 -12.45087 -12.31035 -12.12010 -11.33761 -11.16509 -10.87607 -10.60148 -10.46177 -10.14408 -9.65047 -9.30009 -9.07328 -8.56060 -8.39889 -8.24808 -7.69005 -6.00456 -4.04997 1.15421 1.85434 2.24562 2.86247 3.32267 3.39856 3.43618 3.77034 4.01544 4.47142 4.81739 5.06058 5.16699 5.32740 5.34211 5.64268 5.67812 5.90636 6.23695 6.41191 6.60773 6.75970 7.38991 7.41883 7.56783 7.73012 7.98376 8.27565 8.69737 8.97037 9.41617 9.61359 11.07540 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.007865 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.192338 B = 3559.444735 C = 4249.534801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.260 3.740 10 N -0.606 5.606 11 C 0.181 3.819 12 C -0.184 4.184 13 C -0.141 4.141 14 C -0.136 4.136 15 C -0.229 4.229 16 S 0.131 5.869 17 C 0.704 3.296 18 N -0.880 5.880 19 O -0.587 6.587 20 H 0.262 0.738 21 H 0.044 0.956 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.387 0.613 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -14.012 6.944 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.141 3.859 10 N -0.342 5.342 11 C 0.054 3.946 12 C -0.304 4.304 13 C -0.173 4.173 14 C -0.167 4.167 15 C -0.365 4.365 16 S 0.395 5.605 17 C 0.404 3.596 18 N -0.451 5.451 19 O -0.464 6.464 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.098 0.902 24 H 0.114 0.886 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.176 0.824 28 H 0.216 0.784 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.935 -12.173 7.044 14.367 hybrid contribution 1.309 -0.733 -0.583 1.609 sum 4.244 -12.906 6.461 15.044 Atomic orbital electron populations 1.69944 1.05960 1.26850 1.50553 1.24925 0.94861 0.99147 0.95144 0.86455 0.79997 0.83477 0.77536 1.19836 1.20918 1.21022 1.21509 0.93443 0.90698 1.50835 0.92368 1.19221 0.86903 0.81335 0.98465 1.47550 1.48518 1.36272 1.01863 1.19786 0.93513 0.92696 0.88555 1.25282 1.01841 0.98837 1.04420 1.20028 1.01667 0.92142 1.03422 1.20070 0.95532 1.00831 1.00302 1.25670 1.05079 0.97741 1.07987 1.84612 1.22974 1.05019 1.47927 1.15952 0.79394 0.79634 0.84653 1.43268 1.51229 1.39190 1.11376 1.90926 1.61873 1.63456 1.30175 0.92796 0.93765 0.94942 0.90154 0.88641 0.84898 0.84854 0.82351 0.78391 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -26.00 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 15 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 15 9 C 0.26 6.88 5.16 -5.19 -0.03 6.86 15 10 N -0.61 -12.96 2.44 -182.19 -0.44 -13.40 15 11 C 0.18 2.95 5.67 -5.20 -0.03 2.92 15 12 C -0.18 -2.76 6.09 -36.00 -0.22 -2.98 15 13 C -0.14 -1.83 9.87 -41.21 -0.41 -2.24 15 14 C -0.14 -1.65 10.18 -41.21 -0.42 -2.06 15 15 C -0.23 -2.83 11.23 29.04 0.33 -2.51 15 16 S 0.13 1.93 23.33 -107.50 -2.51 -0.57 15 17 C 0.70 15.13 8.55 -86.92 -0.74 14.39 15 18 N -0.88 -13.00 8.74 27.63 0.24 -12.76 15 19 O -0.59 -15.67 16.76 5.29 0.09 -15.58 15 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.04 1.34 7.42 -51.93 -0.39 0.96 15 22 H 0.03 0.86 8.07 -51.93 -0.42 0.45 15 23 H 0.08 1.04 6.36 -51.93 -0.33 0.71 15 24 H 0.10 1.60 8.07 -51.93 -0.42 1.18 15 25 H 0.13 1.43 7.00 -52.49 -0.37 1.07 15 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 27 H 0.16 1.56 8.06 -52.49 -0.42 1.13 15 28 H 0.39 4.49 5.30 -40.82 -0.22 4.28 15 29 H 0.40 5.18 8.93 -40.82 -0.36 4.81 15 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -34.29 270.40 -7.66 -41.96 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.89 Total: 4.59 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.94 Total: 0.72 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.53 Total: -52.16 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.51 Total: -0.57 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.29 -7.66 -41.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259852713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.466 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds