Wall clock time and date at job start Mon Mar 30 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47174 * 299.99627 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99542 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46496 * 119.99759 * 90.00349 * 10 9 7 12 12 C 1.50695 * 109.47390 * 89.99689 * 11 10 9 13 13 C 1.33394 * 125.20470 * 89.99761 * 12 11 10 14 14 C 1.38419 * 114.92228 * 179.97438 * 13 12 11 15 15 C 1.33390 * 114.92343 * 0.02562 * 14 13 12 16 16 S 1.75882 * 125.20550 * 269.69377 * 12 11 10 17 17 C 1.34771 * 120.00084 * 270.00021 * 10 9 7 18 18 N 1.34774 * 119.99870 * 180.02562 * 17 10 9 19 19 O 1.21589 * 120.00259 * 0.02562 * 17 10 9 20 20 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 22 22 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 23 23 H 1.09001 * 109.47057 * 210.00204 * 11 10 9 24 24 H 1.08999 * 109.47333 * 329.99764 * 11 10 9 25 25 H 1.08002 * 122.53800 * 359.96101 * 13 12 11 26 26 H 1.08001 * 122.53995 * 180.02562 * 14 13 12 27 27 H 1.07997 * 125.20331 * 180.02562 * 15 14 13 28 28 H 0.97000 * 120.00335 * 359.97438 * 18 17 10 29 29 H 0.97006 * 120.00168 * 180.02562 * 18 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2693 12 6 1.7627 -5.2835 1.7043 13 6 1.9084 -6.5695 1.3813 14 6 0.9412 -7.4139 1.8985 15 6 0.0097 -6.8137 2.6411 16 16 0.3414 -5.0883 2.7218 17 6 2.6413 -4.1247 -1.1666 18 7 3.5168 -5.1493 -1.1666 19 8 2.2466 -3.6624 -2.2196 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6243 -2.5567 0.8903 23 1 3.6888 -4.5591 1.1390 24 1 2.6870 -3.3876 2.0289 25 1 2.7194 -6.9249 0.7630 26 1 0.9408 -8.4782 1.7147 27 1 -0.8183 -7.3118 3.1233 28 1 3.8320 -5.5180 -0.3265 29 1 3.8324 -5.5178 -2.0066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259852713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:10 Heat of formation + Delta-G solvation = -17.221935 kcal Electronic energy + Delta-G solvation = -14956.494965 eV Core-core repulsion = 12391.613590 eV Total energy + Delta-G solvation = -2564.881375 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96528 -38.67875 -36.61612 -35.10502 -34.00709 -31.55141 -29.07047 -26.98048 -24.98680 -24.01168 -21.07998 -20.12522 -19.10544 -18.72592 -18.06729 -17.64790 -16.63787 -16.40241 -15.90217 -15.45333 -14.94502 -14.37084 -14.08055 -13.89159 -13.63098 -13.37275 -13.21145 -12.87592 -12.59711 -12.41954 -12.18039 -11.73464 -11.53448 -11.13322 -10.62685 -10.58854 -9.67792 -9.42481 -9.37243 -8.19102 -6.33833 0.09210 0.77986 1.20991 1.38199 1.40680 1.52444 1.82785 2.20081 2.35074 2.44319 3.10283 3.46317 3.89161 4.10800 4.26919 4.54157 4.70261 4.77905 4.95179 5.21276 5.23549 5.39097 5.56363 5.64703 5.78592 6.08610 6.10340 6.14228 6.76068 7.16817 7.34277 7.83294 8.88180 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.007865 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.192338 B = 3559.444735 C = 4249.534801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.280 3.720 10 N -0.611 5.611 11 C 0.181 3.819 12 C -0.209 4.209 13 C -0.125 4.125 14 C -0.141 4.141 15 C -0.213 4.213 16 S 0.065 5.935 17 C 0.698 3.302 18 N -0.845 5.845 19 O -0.648 6.648 20 H 0.267 0.733 21 H -0.006 1.006 22 H 0.023 0.977 23 H 0.120 0.880 24 H 0.084 0.916 25 H 0.161 0.839 26 H 0.168 0.832 27 H 0.185 0.815 28 H 0.407 0.593 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -15.648 7.592 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.159 3.841 10 N -0.346 5.346 11 C 0.056 3.944 12 C -0.328 4.328 13 C -0.156 4.156 14 C -0.171 4.171 15 C -0.349 4.349 16 S 0.328 5.672 17 C 0.397 3.603 18 N -0.417 5.417 19 O -0.530 6.530 20 H 0.075 0.925 21 H 0.012 0.988 22 H 0.041 0.959 23 H 0.137 0.863 24 H 0.102 0.898 25 H 0.178 0.822 26 H 0.186 0.814 27 H 0.202 0.798 28 H 0.240 0.760 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.630 -13.882 7.743 16.556 hybrid contribution 0.779 -0.374 -0.756 1.148 sum 5.409 -14.255 6.987 16.772 Atomic orbital electron populations 1.70066 1.07593 1.28036 1.51158 1.25852 0.95768 1.03010 0.94495 0.85361 0.78835 0.78685 0.77857 1.18992 1.20877 1.19505 1.21784 0.93405 0.91912 1.50964 0.92623 1.18596 0.87223 0.82869 0.95462 1.47353 1.47745 1.35453 1.04002 1.19967 0.95595 0.92975 0.85848 1.25057 1.02071 0.99229 1.06419 1.20427 1.01997 0.91248 1.01977 1.20471 0.94711 1.02415 0.99488 1.25992 1.05782 0.95500 1.07627 1.84857 1.24539 1.08456 1.49350 1.16186 0.79949 0.80530 0.83612 1.42808 1.48870 1.36783 1.13259 1.90883 1.64162 1.65648 1.32316 0.92456 0.98826 0.95882 0.86263 0.89803 0.82193 0.81446 0.79758 0.76024 0.74868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 15 2 C 0.01 0.44 5.46 84.65 0.46 0.91 15 3 Si 0.97 45.48 29.54 68.60 2.03 47.50 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 7 C -0.54 -31.68 9.39 25.60 0.24 -31.44 15 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 15 9 C 0.28 15.50 5.16 85.63 0.44 15.94 15 10 N -0.61 -26.34 2.44 -848.58 -2.07 -28.41 15 11 C 0.18 5.71 5.67 85.63 0.49 6.20 15 12 C -0.21 -5.99 6.09 24.59 0.15 -5.84 15 13 C -0.12 -2.83 9.87 21.22 0.21 -2.62 15 14 C -0.14 -2.87 10.18 21.22 0.22 -2.66 15 15 C -0.21 -4.77 11.23 66.72 0.75 -4.02 15 16 S 0.06 1.91 23.33 -56.49 -1.32 0.60 15 17 C 0.70 29.80 8.55 179.06 1.53 31.33 15 18 N -0.85 -22.80 8.74 -184.75 -1.61 -24.41 15 19 O -0.65 -35.46 16.76 -3.99 -0.07 -35.53 15 20 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 21 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 15 22 H 0.02 1.30 8.07 -2.39 -0.02 1.28 15 23 H 0.12 2.74 6.36 -2.39 -0.02 2.72 15 24 H 0.08 2.84 8.07 -2.39 -0.02 2.82 15 25 H 0.16 2.67 7.00 -2.91 -0.02 2.65 15 26 H 0.17 2.33 8.06 -2.91 -0.02 2.30 15 27 H 0.19 3.06 8.06 -2.91 -0.02 3.04 15 28 H 0.41 7.86 5.30 -92.71 -0.49 7.37 15 29 H 0.42 9.53 8.93 -92.70 -0.83 8.70 15 Total: -1.00 -77.80 270.40 1.60 -76.20 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.13 Total: 13.04 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.49 Total: 7.79 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.40 Total: -109.60 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -0.07 Total: -35.53 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.32 Total: 0.60 kcal Total: -77.80 1.60 -76.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259852713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.978 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds