Wall clock time and date at job start Mon Mar 30 2020 03:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 110.43651 * 2 1 4 4 N 1.30079 * 125.42806 * 58.91729 * 3 2 1 5 5 N 1.26263 * 117.84986 * 179.97438 * 4 3 2 6 6 C 1.32119 * 115.91944 * 0.02562 * 5 4 3 7 7 C 1.40066 * 126.21815 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99907 * 180.02562 * 7 6 5 9 9 C 1.40246 * 119.99928 * 359.97438 * 7 6 5 10 10 N 1.30694 * 120.00130 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00030 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47539 * 89.99955 * 11 9 7 13 13 H 1.48506 * 109.47435 * 209.99890 * 11 9 7 14 14 H 1.48500 * 109.47093 * 330.00116 * 11 9 7 15 15 S 1.71230 * 125.43732 * 238.91281 * 3 2 1 16 16 C 1.54811 * 110.60377 * 122.63202 * 2 1 3 17 17 C 1.54991 * 102.09436 * 97.84745 * 16 2 1 18 18 O 1.44383 * 103.49210 * 37.02298 * 17 16 2 19 19 C 1.43745 * 106.97443 * 319.93863 * 18 17 16 20 20 H 1.09000 * 109.47542 * 59.28746 * 1 2 3 21 21 H 1.08993 * 109.47447 * 179.29674 * 1 2 3 22 22 H 1.09000 * 109.46583 * 299.29369 * 1 2 3 23 23 H 0.97004 * 120.00321 * 180.02562 * 10 9 7 24 24 H 1.09004 * 110.90113 * 216.04976 * 16 2 1 25 25 H 1.09001 * 110.90403 * 339.64604 * 16 2 1 26 26 H 1.08997 * 110.61602 * 278.52509 * 17 16 2 27 27 H 1.08994 * 110.75068 * 155.58750 * 17 16 2 28 28 H 1.08995 * 109.87800 * 267.08994 * 19 18 17 29 29 H 1.09003 * 109.87598 * 145.93609 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 7 1.8067 2.3098 0.9078 5 7 2.3247 3.4525 0.7654 6 6 3.0765 3.6160 -0.3086 7 6 3.7508 4.7873 -0.6764 8 1 4.3403 4.8097 -1.5809 9 6 3.6594 5.9314 0.1296 10 7 2.9448 5.9049 1.2235 11 14 4.5580 7.4938 -0.3611 12 1 3.6727 8.3271 -1.2138 13 1 4.9300 8.2549 0.8586 14 1 5.7859 7.1415 -1.1184 15 16 3.0779 2.0910 -1.1947 16 6 2.0748 -0.7814 1.2203 17 6 2.3828 -2.1704 0.6054 18 8 2.8779 -1.8528 -0.7131 19 6 2.0693 -0.7765 -1.2170 20 1 -0.3634 0.5248 -0.8835 21 1 -0.3634 -1.0275 -0.0126 22 1 -0.3632 0.5028 0.8963 23 1 2.8812 6.6963 1.7808 24 1 2.9823 -0.3168 1.6061 25 1 1.3181 -0.8606 2.0008 26 1 1.4755 -2.7710 0.5403 27 1 3.1446 -2.6897 1.1867 28 1 1.2391 -1.1775 -1.7984 29 1 2.6753 -0.1172 -1.8385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260020806.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:11 Heat of formation + Delta-G solvation = -9.615873 kcal Electronic energy + Delta-G solvation = -15005.914848 eV Core-core repulsion = 12441.363296 eV Total energy + Delta-G solvation = -2564.551552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53179 -38.44401 -34.37354 -33.51856 -29.82103 -29.29556 -26.72301 -26.06529 -23.61561 -22.37847 -20.65110 -19.06934 -17.23770 -17.01272 -15.57246 -15.32591 -15.19944 -14.74076 -13.81028 -13.60290 -13.23134 -12.90289 -12.28537 -12.17473 -11.87882 -11.65768 -11.47192 -11.25203 -11.15335 -10.81914 -10.54302 -10.39827 -10.36515 -9.79439 -9.46337 -8.67063 -8.19187 -8.09625 -7.97921 -6.99408 -4.94390 2.30637 2.76460 2.91253 2.95109 2.98400 3.22537 3.68103 4.21010 4.25481 4.87966 4.99883 5.15411 5.23678 5.40079 5.48169 5.69553 5.87539 5.99057 6.03809 6.11326 6.22942 6.37682 6.51679 6.58860 6.61413 6.92075 7.12829 7.22940 7.82678 7.93340 8.26405 9.82854 10.75459 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.052554 B = 0.006561 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.659884 B = 4266.692113 C = 4479.266316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.019 3.981 3 C -0.135 4.135 4 N -0.225 5.225 5 N -0.342 5.342 6 C 0.172 3.828 7 C -0.365 4.365 8 H 0.099 0.901 9 C 0.064 3.936 10 N -0.697 5.697 11 Si 0.928 3.072 12 H -0.263 1.263 13 H -0.270 1.270 14 H -0.256 1.256 15 S -0.104 6.104 16 C -0.134 4.134 17 C 0.046 3.954 18 O -0.378 6.378 19 C 0.055 3.945 20 H 0.055 0.945 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.289 0.711 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -6.368 -2.233 6.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.015 3.985 3 C -0.415 4.415 4 N -0.065 5.065 5 N -0.192 5.192 6 C -0.077 4.077 7 C -0.409 4.409 8 H 0.117 0.883 9 C -0.167 4.167 10 N -0.318 5.318 11 Si 0.750 3.250 12 H -0.188 1.188 13 H -0.195 1.195 14 H -0.179 1.179 15 S 0.141 5.859 16 C -0.173 4.173 17 C -0.031 4.031 18 O -0.297 6.297 19 C -0.022 4.022 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.001 -6.331 -1.887 6.682 hybrid contribution 0.187 0.852 -0.079 0.876 sum -0.814 -5.479 -1.966 5.878 Atomic orbital electron populations 1.21787 0.93196 1.00587 1.02910 1.19808 0.95349 0.88903 0.94464 1.26708 1.13647 1.00883 1.00278 1.70671 1.16243 0.96973 1.22618 1.72843 1.18636 1.08927 1.18815 1.26084 0.96487 0.94218 0.90944 1.19093 1.22364 0.92387 1.07071 0.88277 1.26214 0.95332 1.00943 0.94237 1.69951 1.24039 1.30033 1.07790 0.85964 0.80265 0.79289 0.79450 1.18767 1.19479 1.17939 1.83676 1.55197 1.13273 1.33749 1.23196 1.02275 0.94330 0.97534 1.23557 0.98886 0.96622 0.84037 1.88832 1.56679 1.52855 1.31337 1.23471 0.94760 0.88380 0.95619 0.92566 0.92973 0.91535 0.89980 0.90327 0.90157 0.92532 0.89347 0.92156 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.24 37.16 0.31 -1.76 15 2 C 0.02 0.36 0.95 -154.13 -0.15 0.22 15 3 C -0.14 -3.18 5.88 -13.02 -0.08 -3.26 15 4 N -0.23 -6.06 11.60 32.68 0.38 -5.68 15 5 N -0.34 -9.94 9.94 31.56 0.31 -9.63 15 6 C 0.17 4.69 7.19 -16.74 -0.12 4.57 15 7 C -0.37 -9.29 9.42 -38.14 -0.36 -9.65 15 8 H 0.10 2.29 7.85 -52.49 -0.41 1.87 15 9 C 0.06 1.53 5.50 -17.28 -0.10 1.44 15 10 N -0.70 -17.91 11.92 55.56 0.66 -17.24 15 11 Si 0.93 17.09 29.56 -169.99 -5.03 12.06 15 12 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 13 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 14 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 15 S -0.10 -2.46 20.92 -107.50 -2.25 -4.71 15 16 C -0.13 -2.25 6.26 -24.73 -0.15 -2.41 15 17 C 0.05 0.65 7.72 38.21 0.29 0.95 15 18 O -0.38 -6.59 11.52 -35.23 -0.41 -7.00 15 19 C 0.06 0.96 6.98 37.74 0.26 1.23 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.29 6.56 8.29 -40.82 -0.34 6.22 15 24 H 0.08 1.50 7.86 -51.93 -0.41 1.09 15 25 H 0.08 1.21 7.87 -51.93 -0.41 0.80 15 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 15 28 H 0.06 0.91 7.69 -51.93 -0.40 0.51 15 29 H 0.09 1.68 5.66 -48.83 -0.28 1.40 15 LS Contribution 260.86 15.07 3.93 3.93 Total: -1.00 -29.96 260.86 -5.63 -35.59 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.15 Total: 1.35 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.09 Total: -8.67 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 1.36 Total: -32.55 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.41 Total: -7.00 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.25 Total: -4.71 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.96 -5.63 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020806.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.975 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds