Wall clock time and date at job start Mon Mar 30 2020 03:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50691 * 110.45974 * 2 1 4 4 N 1.30072 * 125.43507 * 297.42418 * 3 2 1 5 5 N 1.26274 * 117.85775 * 179.68331 * 4 3 2 6 6 C 1.32129 * 115.90689 * 0.53509 * 5 4 3 7 7 C 1.40061 * 126.21037 * 179.77559 * 6 5 4 8 8 H 1.08002 * 120.00211 * 179.69586 * 7 6 5 9 9 C 1.40256 * 120.00270 * 359.68787 * 7 6 5 10 10 N 1.30694 * 119.99910 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00433 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47326 * 270.00675 * 11 9 7 13 13 H 1.48506 * 109.46545 * 30.00425 * 11 9 7 14 14 H 1.48498 * 109.47210 * 150.00136 * 11 9 7 15 15 S 1.71239 * 125.43242 * 117.39065 * 3 2 1 16 16 C 1.54510 * 110.51184 * 237.39371 * 2 1 3 17 17 C 1.54475 * 104.06550 * 241.22108 * 16 2 1 18 18 O 1.44423 * 104.80237 * 23.97822 * 17 16 2 19 19 C 1.44421 * 105.27784 * 319.48608 * 18 17 16 20 20 H 1.08999 * 109.46955 * 60.70141 * 1 2 3 21 21 H 1.08998 * 109.47018 * 180.69510 * 1 2 3 22 22 H 1.08994 * 109.47109 * 300.70242 * 1 2 3 23 23 H 0.96996 * 120.00343 * 179.97438 * 10 9 7 24 24 H 1.09001 * 110.51040 * 359.86470 * 16 2 1 25 25 H 1.09001 * 110.51011 * 122.57202 * 16 2 1 26 26 H 1.09000 * 110.37753 * 142.81373 * 17 16 2 27 27 H 1.09003 * 110.37237 * 265.14956 * 17 16 2 28 28 H 1.08995 * 110.37939 * 281.68557 * 19 18 17 29 29 H 1.08997 * 110.37496 * 159.33699 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4118 0.0000 4 7 1.8630 2.2890 -0.9407 5 7 2.3673 3.4369 -0.7901 6 6 3.0581 3.6227 0.3208 7 6 3.7091 4.8025 0.7028 8 1 4.2437 4.8451 1.6402 9 6 3.6668 5.9287 -0.1322 10 7 3.0195 5.8773 -1.2664 11 14 4.5344 7.5025 0.3776 12 1 3.5994 8.3532 1.1567 13 1 5.7143 7.1682 1.2151 14 1 4.9794 8.2371 -0.8339 15 16 3.0052 2.1176 1.2388 16 6 2.0714 -0.7798 -1.2191 17 6 2.8786 -1.9394 -0.5946 18 8 2.3118 -2.1166 0.7219 19 6 2.0742 -0.7808 1.2169 20 1 -0.3633 0.5029 -0.8962 21 1 -0.3633 -1.0276 0.0125 22 1 -0.3633 0.5247 0.8836 23 1 2.9900 6.6562 -1.8437 24 1 1.2490 -1.1674 -1.8204 25 1 2.7200 -0.1440 -1.8218 26 1 2.7575 -2.8475 -1.1853 27 1 3.9326 -1.6716 -0.5210 28 1 3.0048 -0.3352 1.5682 29 1 1.3350 -0.7987 2.0176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:14 Heat of formation + Delta-G solvation = -30.478031 kcal Electronic energy + Delta-G solvation = -15006.730655 eV Core-core repulsion = 12441.274452 eV Total energy + Delta-G solvation = -2565.456203 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10738 -40.17174 -36.14374 -35.00087 -31.54717 -30.78590 -28.53012 -27.52789 -25.46825 -23.63934 -22.38695 -20.70945 -19.16060 -18.47876 -17.16558 -17.03403 -16.81006 -16.08567 -15.50446 -15.28052 -14.69948 -14.31570 -13.83526 -13.64314 -13.42711 -13.12127 -13.06453 -13.00238 -12.53126 -12.19044 -12.08448 -11.93199 -11.76923 -11.47803 -10.82345 -10.55630 -10.14615 -10.07998 -9.90665 -8.79034 -6.90190 0.43768 0.90925 1.29365 1.39159 1.49192 1.58341 2.12765 2.35678 2.95138 3.06466 3.49701 3.78083 3.86044 4.08841 4.25526 4.29375 4.63610 4.69141 4.71319 4.76578 4.80609 4.91972 5.00064 5.04274 5.18874 5.25171 5.38884 5.74660 5.91296 6.04871 6.36489 8.08127 8.78341 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.052636 B = 0.006520 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.826285 B = 4293.456947 C = 4469.999662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.009 3.991 3 C -0.117 4.117 4 N -0.263 5.263 5 N -0.390 5.390 6 C 0.134 3.866 7 C -0.387 4.387 8 H 0.116 0.884 9 C 0.021 3.979 10 N -0.744 5.744 11 Si 1.013 2.987 12 H -0.255 1.255 13 H -0.244 1.244 14 H -0.263 1.263 15 S -0.079 6.079 16 C -0.134 4.134 17 C 0.048 3.952 18 O -0.378 6.378 19 C 0.059 3.941 20 H 0.048 0.952 21 H 0.087 0.913 22 H 0.050 0.950 23 H 0.298 0.702 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.122 0.878 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -6.278 3.425 7.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.004 3.996 3 C -0.399 4.399 4 N -0.101 5.101 5 N -0.239 5.239 6 C -0.116 4.116 7 C -0.430 4.430 8 H 0.134 0.866 9 C -0.206 4.206 10 N -0.365 5.365 11 Si 0.830 3.170 12 H -0.179 1.179 13 H -0.167 1.167 14 H -0.187 1.187 15 S 0.166 5.834 16 C -0.174 4.174 17 C -0.029 4.029 18 O -0.297 6.297 19 C -0.018 4.018 20 H 0.067 0.933 21 H 0.105 0.895 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.140 0.860 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.482 -6.378 3.046 7.085 hybrid contribution 0.284 1.059 -0.230 1.120 sum 0.766 -5.320 2.816 6.068 Atomic orbital electron populations 1.21720 0.91647 1.02599 1.01712 1.20133 0.96893 0.86078 0.96517 1.27625 1.13063 1.02470 0.96752 1.70629 1.16349 0.97698 1.25394 1.72788 1.21817 1.09622 1.19683 1.26542 0.97485 0.96400 0.91171 1.19662 1.24612 0.93013 1.05763 0.86568 1.27402 0.95292 1.04353 0.93584 1.70042 1.26119 1.32288 1.08096 0.84746 0.79024 0.73923 0.79355 1.17916 1.16678 1.18736 1.83421 1.58188 1.12068 1.29714 1.23011 1.00793 0.96538 0.97028 1.23549 0.96508 0.99283 0.83524 1.89050 1.83268 1.25493 1.31899 1.23576 1.00227 0.82279 0.95765 0.93262 0.89467 0.93051 0.89090 0.88702 0.92635 0.85976 0.92653 0.92826 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.81 8.28 71.98 0.60 -3.22 15 2 C 0.01 0.31 1.02 -51.91 -0.05 0.26 15 3 C -0.12 -5.45 5.79 88.37 0.51 -4.93 15 4 N -0.26 -14.45 11.60 -50.53 -0.59 -15.04 15 5 N -0.39 -23.27 9.94 -54.06 -0.54 -23.81 15 6 C 0.13 7.38 7.19 85.09 0.61 7.99 15 7 C -0.39 -19.68 9.42 23.20 0.22 -19.46 15 8 H 0.12 5.26 7.85 -2.91 -0.02 5.24 15 9 C 0.02 0.99 5.50 85.35 0.47 1.46 15 10 N -0.74 -38.90 11.92 21.88 0.26 -38.64 15 11 Si 1.01 33.99 29.56 68.60 2.03 36.02 15 12 H -0.25 -8.19 7.11 99.48 0.71 -7.49 15 13 H -0.24 -7.64 7.11 99.48 0.71 -6.93 15 14 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 15 S -0.08 -3.69 21.17 -56.49 -1.20 -4.89 15 16 C -0.13 -4.33 6.37 31.61 0.20 -4.12 15 17 C 0.05 1.30 7.63 72.48 0.55 1.85 15 18 O -0.38 -11.50 11.65 -148.98 -1.74 -13.24 15 19 C 0.06 1.91 6.42 72.49 0.47 2.38 15 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.05 1.65 8.14 -2.39 -0.02 1.64 15 23 H 0.30 13.74 8.29 -92.71 -0.77 12.97 15 24 H 0.09 2.64 7.73 -2.39 -0.02 2.63 15 25 H 0.05 2.08 7.73 -2.39 -0.02 2.06 15 26 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.05 1.87 6.39 -2.39 -0.02 1.86 15 29 H 0.11 3.14 7.87 -2.39 -0.02 3.12 15 Total: -1.00 -65.09 261.37 2.97 -62.12 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.16 Total: 15.26 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 3.57 Total: -17.79 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -0.86 Total: -77.49 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.74 Total: -13.24 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.20 Total: -4.89 kcal Total: -65.09 2.97 -62.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.642 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds