Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99822 * 2 1 4 4 H 1.48507 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47302 * 300.00295 * 3 2 1 6 6 H 1.48505 * 109.47054 * 60.00486 * 3 2 1 7 7 C 1.37874 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46930 * 180.02562 * 9 7 2 11 11 N 1.29412 * 125.69620 * 89.96157 * 10 9 7 12 12 N 1.26398 * 116.47270 * 180.02562 * 11 10 9 13 13 C 1.29414 * 116.48143 * 359.97438 * 12 11 10 14 14 C 1.50696 * 125.70184 * 180.02562 * 13 12 11 15 15 H 1.08996 * 109.87131 * 164.27334 * 14 13 12 16 16 C 1.54104 * 109.87807 * 285.28616 * 14 13 12 17 17 C 1.54807 * 104.18947 * 121.45003 * 16 14 13 18 18 C 1.55000 * 102.09188 * 20.88024 * 17 16 14 19 19 O 1.43746 * 109.87712 * 43.26862 * 14 13 12 20 20 S 1.71218 * 108.60223 * 0.02562 * 13 12 11 21 21 H 0.96998 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46710 * 60.00434 * 9 7 2 23 23 H 1.08996 * 109.47592 * 299.99836 * 9 7 2 24 24 H 1.09002 * 110.48389 * 240.12627 * 16 14 13 25 25 H 1.09002 * 110.48739 * 2.77211 * 16 14 13 26 26 H 1.09001 * 110.90599 * 139.07326 * 17 16 14 27 27 H 1.09000 * 110.91064 * 262.68530 * 17 16 14 28 28 H 1.08999 * 110.62095 * 81.47620 * 18 17 16 29 29 H 1.09002 * 110.61754 * 204.31420 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 7 2.7216 -4.2181 1.0504 12 7 3.5326 -5.1661 0.8478 13 6 3.7815 -5.4585 -0.3880 14 6 4.7102 -6.5453 -0.8648 15 1 4.5240 -6.7562 -1.9178 16 6 6.1744 -6.1064 -0.6691 17 6 6.7772 -7.1953 0.2515 18 6 5.7993 -8.3788 0.0380 19 8 4.5101 -7.7361 -0.0850 20 16 2.8792 -4.4043 -1.3910 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5572 0.8896 24 1 6.6968 -6.0835 -1.6255 25 1 6.2188 -5.1305 -0.1856 26 1 7.7848 -7.4608 -0.0682 27 1 6.7734 -6.8706 1.2921 28 1 6.0450 -8.9196 -0.8759 29 1 5.8163 -9.0504 0.8963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260023487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -15.465898 kcal Electronic energy + Delta-G solvation = -14509.734294 eV Core-core repulsion = 11944.929067 eV Total energy + Delta-G solvation = -2564.805228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.29171 -40.26058 -35.80722 -33.81987 -33.03832 -31.61290 -29.05625 -26.99920 -25.08807 -23.74764 -22.48432 -20.54101 -20.23690 -18.71625 -17.70569 -17.20145 -16.61572 -16.45280 -16.00564 -15.29548 -14.57795 -14.43205 -14.42639 -14.19707 -13.60524 -12.87640 -12.84823 -12.73023 -12.69553 -12.22610 -12.14023 -11.77559 -11.76318 -11.35224 -11.18740 -10.86343 -10.66756 -10.60075 -10.41892 -8.31111 -6.45055 -0.47074 -0.04339 0.43746 1.39053 1.40554 1.52635 1.59822 2.36481 2.83263 3.02610 3.09562 3.57948 3.73826 3.80755 3.97958 4.12706 4.35778 4.37888 4.62609 4.74671 4.83287 4.92406 5.02167 5.08934 5.17208 5.20388 5.58668 5.83047 5.92300 6.61436 7.23862 7.65290 8.79962 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.005513 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.641589 B = 5077.976321 C = 5295.328578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.097 3.903 10 C 0.017 3.983 11 N -0.317 5.317 12 N -0.274 5.274 13 C -0.051 4.051 14 C 0.163 3.837 15 H 0.122 0.878 16 C -0.143 4.143 17 C -0.147 4.147 18 C 0.040 3.960 19 O -0.390 6.390 20 S 0.223 5.777 21 H 0.271 0.729 22 H 0.043 0.957 23 H 0.027 0.973 24 H 0.121 0.879 25 H 0.057 0.943 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.197 -13.353 -7.029 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.056 3.944 10 C -0.261 4.261 11 N -0.155 5.155 12 N -0.111 5.111 13 C -0.332 4.332 14 C 0.101 3.899 15 H 0.139 0.861 16 C -0.182 4.182 17 C -0.184 4.184 18 C -0.036 4.036 19 O -0.309 6.309 20 S 0.468 5.532 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.139 0.861 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.856 -13.380 -6.576 19.686 hybrid contribution -0.051 1.120 0.562 1.254 sum 12.805 -12.260 -6.014 18.720 Atomic orbital electron populations 1.70041 1.07494 1.28531 1.49828 1.25837 0.95837 1.02932 0.93821 0.85317 0.78678 0.78297 0.78292 1.19225 1.19222 1.20270 1.21142 0.92943 0.90352 1.53140 0.92847 1.17777 0.90974 0.87174 0.98452 1.29872 1.02234 1.01998 0.91967 1.71484 1.09554 1.06079 1.28359 1.71285 1.11253 1.09572 1.19006 1.29641 1.05410 1.04933 0.93216 1.21356 0.92005 0.80948 0.95593 0.86063 1.23053 0.92166 0.99941 1.03025 1.23123 1.01021 0.94367 0.99929 1.23913 0.80774 0.95392 1.03471 1.89009 1.31853 1.35895 1.74150 1.82974 1.35658 1.24183 1.10383 0.91977 0.93902 0.95528 0.86073 0.92389 0.86593 0.92061 0.88938 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 13.29 21.45 0.28 -53.05 15 2 C 0.02 0.88 5.46 84.65 0.46 1.34 15 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 7 C -0.54 -30.18 9.09 25.60 0.23 -29.95 15 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 15 9 C 0.10 5.17 5.58 29.11 0.16 5.33 15 10 C 0.02 0.81 6.72 88.47 0.59 1.41 15 11 N -0.32 -15.72 11.66 -50.85 -0.59 -16.32 15 12 N -0.27 -12.07 11.65 -50.85 -0.59 -12.66 15 13 C -0.05 -1.81 6.21 88.46 0.55 -1.26 15 14 C 0.16 4.08 3.95 30.22 0.12 4.20 15 15 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 16 C -0.14 -2.80 6.63 31.58 0.21 -2.59 15 17 C -0.15 -2.41 7.16 31.90 0.23 -2.18 15 18 C 0.04 0.68 7.72 72.67 0.56 1.25 15 19 O -0.39 -10.76 11.18 -148.98 -1.67 -12.43 15 20 S 0.22 7.81 23.04 -56.49 -1.30 6.51 15 21 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 22 H 0.04 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.03 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.12 1.48 8.14 -2.39 -0.02 1.46 15 25 H 0.06 1.45 7.69 -2.39 -0.02 1.43 15 26 H 0.12 1.11 8.14 -2.39 -0.02 1.09 15 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 15 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 Total: -1.00 -69.98 269.07 2.43 -67.55 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: 1.15 Total: -2.37 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.12 Total: -22.45 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -0.90 Total: -82.03 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.67 Total: -12.43 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.30 Total: 6.51 kcal Total: -69.98 2.43 -67.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.080 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds