Wall clock time and date at job start Mon Mar 30 2020 03:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99248 * 3 2 1 5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99828 * 3 2 1 7 7 C 1.37877 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47450 * 179.97438 * 9 7 2 11 11 N 1.31128 * 126.55620 * 89.99711 * 10 9 7 12 12 C 1.34490 * 105.61855 * 180.02562 * 11 10 9 13 13 C 1.50700 * 126.28680 * 179.97438 * 12 11 10 14 14 H 1.09008 * 108.73184 * 357.04952 * 13 12 11 15 15 C 1.52937 * 108.89036 * 115.56069 * 13 12 11 16 16 C 1.55155 * 108.96227 * 150.89216 * 15 13 12 17 17 S 1.83992 * 100.90915 * 318.56348 * 16 15 13 18 18 C 1.53707 * 108.88567 * 238.54606 * 13 12 11 19 19 N 1.29940 * 107.42424 * 0.24176 * 12 11 10 20 20 O 1.21296 * 110.25387 * 359.57784 * 19 12 11 21 21 H 0.97000 * 119.99782 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47470 * 59.99534 * 9 7 2 23 23 H 1.09000 * 109.47256 * 300.00015 * 9 7 2 24 24 H 1.09000 * 109.60279 * 270.82373 * 15 13 12 25 25 H 1.09000 * 109.60143 * 30.96547 * 15 13 12 26 26 H 1.09000 * 111.13003 * 76.47364 * 16 15 13 27 27 H 1.08992 * 111.13132 * 200.60927 * 16 15 13 28 28 H 1.09004 * 110.34318 * 355.24900 * 18 13 12 29 29 H 1.09002 * 110.34722 * 117.50826 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7378 -4.2382 1.0538 12 6 3.5544 -5.1926 0.5732 13 6 4.3784 -6.1552 1.3891 14 1 4.2474 -5.9201 2.4454 15 6 3.8770 -7.5771 1.1324 16 6 5.0570 -8.5682 1.3135 17 16 6.4179 -7.6434 0.4901 18 6 5.8600 -5.9786 1.0201 19 7 3.5069 -5.1285 -0.7237 20 8 2.7479 -4.2493 -1.0731 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.0845 -7.8188 1.8406 25 1 3.4904 -7.6506 0.1160 26 1 5.2750 -8.7310 2.3690 27 1 4.8589 -9.5119 0.8056 28 1 5.9645 -5.2658 0.2020 29 1 6.4298 -5.6466 1.8880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260052580.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:46 Heat of formation + Delta-G solvation = 52.037280 kcal Electronic energy + Delta-G solvation = -14639.522692 eV Core-core repulsion = 12077.644622 eV Total energy + Delta-G solvation = -2561.878070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -44.86608 -37.23443 -34.77766 -33.57298 -31.83187 -29.81971 -28.42969 -25.76852 -24.10443 -23.04429 -21.88818 -19.59633 -17.56107 -17.09842 -16.81556 -16.28769 -15.44280 -14.91883 -14.50967 -14.09225 -13.37319 -12.97985 -12.56078 -12.49658 -12.26724 -12.10221 -11.90736 -11.44134 -11.13618 -11.00062 -10.81798 -10.77657 -10.38542 -10.16119 -10.09386 -9.90518 -9.00630 -8.64955 -7.81675 -6.28786 -4.34934 1.67801 1.84111 2.15948 2.88593 3.23500 3.27489 3.31235 3.68556 3.92474 4.22292 4.29187 4.64253 4.75105 4.84584 4.87850 5.05157 5.13258 5.31819 5.38798 5.54443 5.74895 5.85555 5.99803 6.50133 6.61156 7.06799 7.13516 7.64067 7.87426 8.65005 8.86881 9.30223 10.81549 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050046 B = 0.005063 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.355015 B = 5529.123980 C = 5783.547250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.239 3.761 11 N -0.506 5.506 12 C 0.158 3.842 13 C 0.004 3.996 14 H 0.108 0.892 15 C -0.119 4.119 16 C -0.065 4.065 17 S -0.291 6.291 18 C -0.059 4.059 19 N -0.398 5.398 20 O 0.063 5.937 21 H 0.269 0.731 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 -12.725 3.111 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.062 3.938 10 C 0.022 3.978 11 N -0.240 5.240 12 C -0.116 4.116 13 C -0.018 4.018 14 H 0.126 0.874 15 C -0.158 4.158 16 C -0.213 4.213 17 S -0.065 6.065 18 C -0.208 4.208 19 N -0.110 5.110 20 O 0.008 5.992 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.054 -13.554 2.352 15.941 hybrid contribution -0.609 1.501 0.658 1.748 sum 7.444 -12.053 3.010 14.483 Atomic orbital electron populations 1.69910 1.06039 1.27788 1.48748 1.24922 0.95001 0.99450 0.94271 0.86409 0.79465 0.81832 0.78979 1.19879 1.20884 1.19925 1.20745 0.93204 0.88851 1.53668 0.92115 1.18216 0.89850 0.84485 1.01236 1.30174 0.94335 0.94471 0.78852 1.71965 1.13386 1.09246 1.29430 1.25332 0.99346 0.98041 0.88856 1.19921 0.90582 0.91726 0.99527 0.87390 1.22457 0.98068 0.90743 1.04575 1.24326 0.93533 1.00423 1.03046 1.87821 1.40914 1.05332 1.72401 1.24022 0.95566 0.96210 1.04972 1.74503 1.12330 1.08918 1.15251 1.85283 1.42688 1.34616 1.36641 0.92157 0.92339 0.91313 0.89285 0.89635 0.88787 0.87306 0.87845 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.66 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 20.56 29.54 -169.99 -5.02 15.54 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.53 -13.96 9.09 -34.44 -0.31 -14.28 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 9 C 0.10 2.43 5.60 -29.04 -0.16 2.27 15 10 C 0.24 5.30 7.70 -13.06 -0.10 5.20 15 11 N -0.51 -10.72 11.55 -9.87 -0.11 -10.83 15 12 C 0.16 2.90 6.28 -156.38 -0.98 1.92 15 13 C 0.00 0.05 3.13 -91.44 -0.29 -0.23 15 14 H 0.11 1.36 8.14 -51.92 -0.42 0.93 15 15 C -0.12 -1.35 5.79 -25.62 -0.15 -1.50 15 16 C -0.07 -0.62 7.52 38.30 0.29 -0.33 15 17 S -0.29 -3.69 23.23 -107.50 -2.50 -6.18 15 18 C -0.06 -0.77 6.98 37.52 0.26 -0.51 15 19 N -0.40 -7.86 11.89 30.89 0.37 -7.50 15 20 O 0.06 1.34 11.31 18.08 0.20 1.55 15 21 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.07 1.71 8.14 -51.93 -0.42 1.29 15 24 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.08 1.12 7.73 -51.93 -0.40 0.72 15 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.11 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.10 1.56 7.52 -51.93 -0.39 1.17 15 29 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 267.97 15.07 4.04 4.04 Total: -1.00 -28.29 267.97 -7.12 -35.41 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.29 Total: -2.59 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.54 Total: -5.77 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.99 Total: -41.99 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.50 Total: -6.18 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.29 -7.12 -35.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052580.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.445 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds