Wall clock time and date at job start Mon Mar 30 2020 03:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99248 * 3 2 1 5 5 H 1.48498 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46714 * 119.99828 * 3 2 1 7 7 C 1.37877 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47450 * 179.97438 * 9 7 2 11 11 N 1.31128 * 126.55620 * 89.99711 * 10 9 7 12 12 C 1.34490 * 105.61855 * 180.02562 * 11 10 9 13 13 C 1.50700 * 126.28680 * 179.97438 * 12 11 10 14 14 H 1.09008 * 108.73184 * 357.04952 * 13 12 11 15 15 C 1.52937 * 108.89036 * 115.56069 * 13 12 11 16 16 C 1.55155 * 108.96227 * 150.89216 * 15 13 12 17 17 S 1.83992 * 100.90915 * 318.56348 * 16 15 13 18 18 C 1.53707 * 108.88567 * 238.54606 * 13 12 11 19 19 N 1.29940 * 107.42424 * 0.24176 * 12 11 10 20 20 O 1.21296 * 110.25387 * 359.57784 * 19 12 11 21 21 H 0.97000 * 119.99782 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47470 * 59.99534 * 9 7 2 23 23 H 1.09000 * 109.47256 * 300.00015 * 9 7 2 24 24 H 1.09000 * 109.60279 * 270.82373 * 15 13 12 25 25 H 1.09000 * 109.60143 * 30.96547 * 15 13 12 26 26 H 1.09000 * 111.13003 * 76.47364 * 16 15 13 27 27 H 1.08992 * 111.13132 * 200.60927 * 16 15 13 28 28 H 1.09004 * 110.34318 * 355.24900 * 18 13 12 29 29 H 1.09002 * 110.34722 * 117.50826 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7378 -4.2382 1.0538 12 6 3.5544 -5.1926 0.5732 13 6 4.3784 -6.1552 1.3891 14 1 4.2474 -5.9201 2.4454 15 6 3.8770 -7.5771 1.1324 16 6 5.0570 -8.5682 1.3135 17 16 6.4179 -7.6434 0.4901 18 6 5.8600 -5.9786 1.0201 19 7 3.5069 -5.1285 -0.7237 20 8 2.7479 -4.2493 -1.0731 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.0845 -7.8188 1.8406 25 1 3.4904 -7.6506 0.1160 26 1 5.2750 -8.7310 2.3690 27 1 4.8589 -9.5119 0.8056 28 1 5.9645 -5.2658 0.2020 29 1 6.4298 -5.6466 1.8880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260052580.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:44 Heat of formation + Delta-G solvation = 34.251682 kcal Electronic energy + Delta-G solvation = -14640.293934 eV Core-core repulsion = 12077.644622 eV Total energy + Delta-G solvation = -2562.649312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.48234 -38.41277 -36.43144 -35.36831 -33.52047 -30.90224 -30.23299 -26.86641 -26.03940 -24.47361 -23.30463 -20.91950 -19.27834 -18.61163 -18.28122 -17.74065 -16.79343 -16.57947 -15.72604 -15.17482 -14.90278 -14.45969 -14.23514 -13.93834 -13.44643 -13.27138 -13.04709 -13.03067 -12.84070 -12.60963 -12.37189 -12.18695 -12.05511 -11.82350 -11.77558 -11.04549 -10.72483 -10.68243 -8.79040 -8.32271 -6.45819 0.20625 0.74379 1.13827 1.38902 1.44621 1.44662 1.53595 1.98918 2.38172 2.57086 2.98968 3.06812 3.51045 3.71535 3.77493 3.86947 4.12452 4.35792 4.45494 4.55878 4.67310 4.81129 4.85958 4.92024 5.00920 5.08612 5.21646 5.57098 5.86383 6.58386 7.21737 7.23122 8.78311 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050046 B = 0.005063 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.355015 B = 5529.123980 C = 5783.547250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.109 3.891 10 C 0.231 3.769 11 N -0.517 5.517 12 C 0.172 3.828 13 C 0.002 3.998 14 H 0.126 0.874 15 C -0.116 4.116 16 C -0.044 4.044 17 S -0.330 6.330 18 C -0.053 4.053 19 N -0.406 5.406 20 O 0.050 5.950 21 H 0.273 0.727 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.625 -13.509 4.196 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.012 3.988 11 N -0.252 5.252 12 C -0.102 4.102 13 C -0.019 4.019 14 H 0.144 0.856 15 C -0.155 4.155 16 C -0.192 4.192 17 S -0.104 6.104 18 C -0.202 4.202 19 N -0.120 5.120 20 O -0.001 6.001 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.096 0.904 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.908 -14.342 3.416 17.225 hybrid contribution -0.872 1.649 0.338 1.895 sum 8.036 -12.693 3.753 15.485 Atomic orbital electron populations 1.69992 1.07287 1.28869 1.49150 1.25720 0.95819 1.02640 0.93628 0.85443 0.78369 0.77892 0.79068 1.19383 1.19919 1.19533 1.20988 0.93065 0.90256 1.54140 0.92888 1.17907 0.89979 0.84730 1.00319 1.29736 0.94742 0.94663 0.79630 1.71966 1.13939 1.09921 1.29325 1.26128 0.98131 0.97339 0.88639 1.20295 0.90106 0.91979 0.99564 0.85599 1.22435 0.99406 0.89662 1.04036 1.24452 0.90368 0.99859 1.04487 1.87992 1.42856 1.05935 1.73629 1.23954 0.95446 0.95966 1.04841 1.74505 1.12497 1.08869 1.16176 1.85273 1.43167 1.35104 1.36588 0.91766 0.92925 0.92511 0.87020 0.91659 0.85995 0.85416 0.90402 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.51 13.29 21.45 0.28 -50.23 15 2 C 0.02 1.22 5.46 84.65 0.46 1.68 15 3 Si 0.97 41.81 29.54 68.60 2.03 43.83 15 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 7 C -0.55 -29.36 9.09 25.60 0.23 -29.13 15 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 15 9 C 0.11 5.41 5.60 29.10 0.16 5.57 15 10 C 0.23 10.36 7.70 88.38 0.68 11.04 15 11 N -0.52 -21.73 11.55 -303.22 -3.50 -25.23 15 12 C 0.17 6.16 6.28 138.47 0.87 7.03 15 13 C 0.00 0.05 3.13 -11.32 -0.04 0.01 15 14 H 0.13 2.77 8.14 -2.38 -0.02 2.75 15 15 C -0.12 -2.30 5.79 31.31 0.18 -2.12 15 16 C -0.04 -0.68 7.52 72.72 0.55 -0.13 15 17 S -0.33 -7.77 23.23 -56.49 -1.31 -9.08 15 18 C -0.05 -1.31 6.98 72.22 0.50 -0.80 15 19 N -0.41 -16.06 11.89 -60.34 -0.72 -16.77 15 20 O 0.05 2.17 11.31 74.78 0.85 3.02 15 21 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 22 H 0.05 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.06 2.91 8.14 -2.39 -0.02 2.89 15 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 15 25 H 0.06 1.60 7.73 -2.39 -0.02 1.58 15 26 H 0.12 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.13 1.55 8.14 -2.39 -0.02 1.53 15 28 H 0.08 2.33 7.52 -2.39 -0.02 2.31 15 29 H 0.12 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -60.45 267.97 2.39 -58.06 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.16 Total: 3.25 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 3.61 Total: -6.85 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -3.93 Total: -92.24 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.31 Total: -9.08 kcal Total: -60.45 2.39 -58.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260052580.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.315 kcal (2) G-P(sol) polarization free energy of solvation -60.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds