Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99709 * 2 1 4 4 H 1.48499 * 109.47199 * 270.00241 * 3 2 1 5 5 H 1.48502 * 109.47365 * 30.00056 * 3 2 1 6 6 H 1.48499 * 109.47323 * 150.00004 * 3 2 1 7 7 C 1.37872 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00177 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47454 * 180.02562 * 9 7 2 11 11 N 1.34867 * 126.15938 * 265.14150 * 10 9 7 12 12 H 0.97006 * 126.06519 * 359.97438 * 11 10 9 13 13 N 1.39940 * 107.88053 * 180.19095 * 11 10 9 14 14 C 1.31423 * 108.37500 * 359.72597 * 13 11 10 15 15 C 1.35421 * 126.16281 * 85.00028 * 10 9 7 16 16 C 1.51156 * 125.07724 * 0.14283 * 15 10 9 17 17 S 1.81813 * 108.32968 * 197.23565 * 16 15 10 18 18 O 1.42100 * 109.47142 * 198.89048 * 17 16 15 19 19 C 1.81792 * 101.80577 * 314.67983 * 17 16 15 20 20 C 1.50629 * 124.31462 * 180.25890 * 14 13 11 21 21 H 0.97000 * 120.00369 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.46859 * 60.00467 * 9 7 2 23 23 H 1.08997 * 109.47158 * 300.00500 * 9 7 2 24 24 H 1.09000 * 109.68932 * 316.94263 * 16 15 10 25 25 H 1.08999 * 109.69115 * 77.52205 * 16 15 10 26 26 H 1.08995 * 109.55348 * 185.90656 * 19 17 16 27 27 H 1.09000 * 109.54850 * 306.10487 * 19 17 16 28 28 H 1.09001 * 109.20064 * 78.93779 * 20 14 13 29 29 H 1.09006 * 109.19021 * 319.66571 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0140 -2.6147 0.0001 11 7 4.3667 -3.3339 1.0851 12 1 4.3424 -3.0283 2.0054 13 7 4.7787 -4.5977 0.6475 14 6 4.6708 -4.6383 -0.6617 15 6 4.1902 -3.4001 -1.0890 16 6 3.9129 -2.9827 -2.5150 17 16 3.8017 -4.4815 -3.5382 18 8 3.9798 -4.1362 -4.9050 19 6 5.2392 -5.4331 -2.9613 20 6 5.0157 -5.8376 -1.5053 21 1 -0.4851 0.8400 0.0004 22 1 3.8752 -0.6795 0.8896 23 1 3.8745 -0.6806 -0.8904 24 1 2.9711 -2.4358 -2.5611 25 1 4.7235 -2.3502 -2.8768 26 1 5.3551 -6.3267 -3.5745 27 1 6.1370 -4.8196 -3.0373 28 1 4.1994 -6.5581 -1.4548 29 1 5.9242 -6.2988 -1.1180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = 24.034231 kcal Electronic energy + Delta-G solvation = -14984.368148 eV Core-core repulsion = 12421.275774 eV Total energy + Delta-G solvation = -2563.092374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87888 -35.51240 -34.45336 -33.50982 -31.84255 -30.44678 -28.55644 -25.86384 -24.00885 -22.78317 -19.81650 -18.98208 -17.05800 -17.00812 -16.53684 -15.28491 -15.04154 -14.54213 -14.34752 -13.69761 -13.62058 -13.15332 -12.96359 -12.52465 -12.25040 -12.07307 -11.90427 -11.50821 -11.33263 -10.88886 -10.62210 -10.21837 -10.18819 -9.64321 -9.57779 -8.75605 -8.72309 -8.08766 -7.70016 -6.24018 -4.26222 1.81475 2.42748 2.76289 3.16654 3.17373 3.24667 3.26618 3.35647 4.02659 4.25719 4.80090 4.94950 5.08048 5.18416 5.42731 5.58575 5.71394 5.78441 5.90695 5.98954 6.10558 6.20597 6.46373 6.70475 7.00898 7.10347 7.41780 7.81140 8.16133 8.29591 8.79972 9.34059 10.88042 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.027120 B = 0.008155 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.204871 B = 3432.637753 C = 4080.333156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.035 3.965 10 C 0.165 3.835 11 N -0.471 5.471 12 H 0.437 0.563 13 N -0.313 5.313 14 C 0.068 3.932 15 C -0.238 4.238 16 C -0.337 4.337 17 S 1.238 4.762 18 O -0.866 6.866 19 C -0.437 4.437 20 C -0.008 4.008 21 H 0.267 0.733 22 H 0.030 0.970 23 H 0.043 0.957 24 H 0.134 0.866 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -9.166 -1.322 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.098 0.902 9 C -0.004 4.004 10 C 0.034 3.966 11 N -0.178 5.178 12 H 0.281 0.719 13 N -0.137 5.137 14 C -0.098 4.098 15 C -0.250 4.250 16 C -0.476 4.476 17 S 1.437 4.563 18 O -0.861 6.861 19 C -0.574 4.574 20 C -0.048 4.048 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.152 0.848 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.152 -9.959 -1.031 12.304 hybrid contribution 2.057 2.847 -0.370 3.531 sum 9.209 -7.112 -1.402 11.719 Atomic orbital electron populations 1.69868 1.06183 1.27290 1.49429 1.24930 0.94735 0.98876 0.94164 0.86879 0.80300 0.83866 0.78925 1.19873 1.20993 1.19094 1.20777 0.87404 0.95078 1.52711 0.90193 1.18558 0.98074 0.85366 0.98375 1.21432 0.92814 0.96277 0.86054 1.46041 1.52836 1.10067 1.08816 0.71872 1.77250 1.24933 0.99894 1.11652 1.22062 1.00069 0.95467 0.92206 1.18539 1.18106 0.94678 0.93696 1.25799 1.07892 1.13715 1.00241 1.70688 1.04589 0.95815 0.85187 1.93040 1.82937 1.83162 1.26986 1.27399 1.16616 1.10667 1.02752 1.19258 1.03118 0.93096 0.89295 0.92277 0.95158 0.93915 0.84846 0.89894 0.86889 0.89471 0.88718 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.96 55.43 0.77 -24.75 15 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.27 -5.77 6.54 56.52 0.37 -5.40 15 7 C -0.52 -13.42 9.65 -34.44 -0.33 -13.75 15 8 H 0.08 2.25 7.98 -52.49 -0.42 1.83 15 9 C 0.04 0.76 4.30 -29.03 -0.12 0.64 15 10 C 0.17 3.22 6.40 -82.26 -0.53 2.69 15 11 N -0.47 -8.28 7.35 33.48 0.25 -8.03 15 12 H 0.44 6.54 8.96 -182.71 -1.64 4.90 15 13 N -0.31 -5.42 12.71 33.68 0.43 -4.99 15 14 C 0.07 1.08 6.87 -82.32 -0.57 0.52 15 15 C -0.24 -4.24 5.85 -104.92 -0.61 -4.85 15 16 C -0.34 -5.61 6.27 36.23 0.23 -5.38 15 17 S 1.24 16.71 13.67 -107.50 -1.47 15.24 15 18 O -0.87 -16.51 18.14 -35.23 -0.64 -17.15 15 19 C -0.44 -4.95 6.43 37.03 0.24 -4.71 15 20 C -0.01 -0.09 6.06 -28.04 -0.17 -0.26 15 21 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 22 H 0.03 0.64 7.20 -51.92 -0.37 0.26 15 23 H 0.04 0.92 7.40 -51.93 -0.38 0.53 15 24 H 0.13 2.39 8.14 -51.93 -0.42 1.97 15 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 26 H 0.11 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 LS Contribution 260.06 15.07 3.92 3.92 Total: -1.00 -33.63 260.06 -7.89 -41.52 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.52 Total: 2.14 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -1.96 Total: -23.16 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 1.45 Total: -37.78 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.64 Total: -17.15 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Atomic # 16 Polarization: 16.71 SS G_CDS: -1.47 Total: 15.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.63 -7.89 -41.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.558 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds