Wall clock time and date at job start Mon Mar 30 2020 03:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99588 * 2 1 4 4 H 1.48505 * 109.46954 * 269.99715 * 3 2 1 5 5 H 1.48502 * 109.47332 * 29.99225 * 3 2 1 6 6 H 1.48492 * 109.47143 * 149.99676 * 3 2 1 7 7 C 1.37874 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47270 * 179.97438 * 9 7 2 11 11 N 1.34867 * 126.16514 * 264.98374 * 10 9 7 12 12 H 0.96999 * 126.05707 * 0.05345 * 11 10 9 13 13 N 1.39937 * 107.88114 * 180.02562 * 11 10 9 14 14 C 1.31418 * 108.37685 * 0.07679 * 13 11 10 15 15 C 1.35431 * 126.15947 * 84.99862 * 10 9 7 16 16 C 1.51144 * 125.08127 * 359.79376 * 15 10 9 17 17 S 1.81822 * 108.32709 * 162.38264 * 16 15 10 18 18 O 1.42105 * 109.46854 * 161.14154 * 17 16 15 19 19 C 1.81791 * 101.80779 * 45.35022 * 17 16 15 20 20 C 1.50636 * 124.31204 * 179.56918 * 14 13 11 21 21 H 0.96997 * 120.00218 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47233 * 60.00150 * 9 7 2 23 23 H 1.08996 * 109.47815 * 299.99912 * 9 7 2 24 24 H 1.09004 * 109.69233 * 42.67868 * 16 15 10 25 25 H 1.08998 * 109.73083 * 282.10975 * 16 15 10 26 26 H 1.09000 * 109.54789 * 53.82427 * 19 17 16 27 27 H 1.09003 * 109.55219 * 174.11400 * 19 17 16 28 28 H 1.09007 * 109.19526 * 281.11522 * 20 14 13 29 29 H 1.08998 * 109.19701 * 40.43393 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.6754 -4.3113 -1.0841 12 1 2.4221 -4.1382 -2.0043 13 7 3.5676 -5.2966 -0.6467 14 6 3.6547 -5.2249 0.6626 15 6 2.8223 -4.1899 1.0898 16 6 2.6046 -3.7365 2.5151 17 16 3.1705 -5.0581 3.6282 18 8 3.3914 -4.5223 4.9257 19 6 4.7640 -5.5158 2.8823 20 6 4.5125 -6.1303 1.5074 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5568 0.8902 24 1 1.5446 -3.5448 2.6818 25 1 3.1762 -2.8278 2.7036 26 1 5.3851 -4.6266 2.7748 27 1 5.2701 -6.2411 3.5195 28 1 4.0079 -7.0885 1.6317 29 1 5.4668 -6.2905 1.0058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:52 Heat of formation + Delta-G solvation = 19.301547 kcal Electronic energy + Delta-G solvation = -14954.825372 eV Core-core repulsion = 12391.527774 eV Total energy + Delta-G solvation = -2563.297598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78860 -35.48688 -34.40324 -33.52117 -31.71781 -30.27700 -28.12139 -25.70523 -23.97056 -23.16776 -19.78276 -18.92694 -17.01828 -16.64828 -16.38322 -15.22468 -15.04451 -14.65339 -14.21936 -13.74457 -13.62670 -13.05865 -12.68250 -12.42293 -12.27936 -11.79229 -11.56359 -11.53151 -11.27812 -10.89040 -10.78714 -10.27238 -9.91448 -9.72314 -9.54640 -8.66490 -8.59899 -8.09833 -7.63608 -6.22687 -4.27810 1.84865 2.50497 2.77315 3.20235 3.21999 3.28239 3.33951 3.43355 4.04557 4.31078 4.85551 4.98633 5.13580 5.22544 5.52337 5.63752 5.73357 5.84882 5.98003 6.08377 6.23991 6.34005 6.56739 7.15954 7.24516 7.32788 7.72270 7.87149 8.09188 8.25516 8.75903 9.37824 10.86955 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.007843 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.790340 B = 3569.211597 C = 4174.073772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.070 3.930 10 C 0.161 3.839 11 N -0.473 5.473 12 H 0.437 0.563 13 N -0.318 5.318 14 C 0.066 3.934 15 C -0.244 4.244 16 C -0.329 4.329 17 S 1.229 4.771 18 O -0.866 6.866 19 C -0.435 4.435 20 C -0.007 4.007 21 H 0.265 0.735 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -12.322 1.805 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.031 3.969 10 C 0.030 3.970 11 N -0.179 5.179 12 H 0.281 0.719 13 N -0.142 5.142 14 C -0.100 4.100 15 C -0.256 4.256 16 C -0.468 4.468 17 S 1.429 4.571 18 O -0.862 6.862 19 C -0.572 4.572 20 C -0.047 4.047 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.131 0.869 28 H 0.111 0.889 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.668 -13.202 1.634 13.799 hybrid contribution 1.496 3.451 -0.055 3.762 sum 5.164 -9.751 1.579 11.147 Atomic orbital electron populations 1.69926 1.05983 1.27262 1.49620 1.24958 0.94907 0.99319 0.94733 0.86501 0.79885 0.82916 0.78258 1.20484 1.20907 1.19820 1.20903 0.93074 0.89450 1.52252 0.92425 1.18120 0.91587 0.87749 0.99449 1.21981 0.95881 0.93322 0.85785 1.46076 1.35942 1.27014 1.08911 0.71950 1.77219 1.13504 1.11895 1.11573 1.22049 0.98322 0.97356 0.92249 1.18556 1.09115 1.04166 0.93788 1.25709 1.08698 1.11444 1.00990 1.70350 0.97275 1.07141 0.82336 1.93055 1.83243 1.80881 1.28989 1.27364 1.18402 1.07091 1.04387 1.19234 0.98831 0.96221 0.90400 0.92520 0.94951 0.93089 0.86146 0.89065 0.89283 0.86934 0.88921 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 13.29 55.43 0.74 -24.08 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 15 7 C -0.52 -13.67 9.09 -34.44 -0.31 -13.99 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.07 1.63 5.23 -29.04 -0.15 1.47 15 10 C 0.16 3.25 6.40 -82.26 -0.53 2.72 15 11 N -0.47 -8.56 7.35 33.48 0.25 -8.31 15 12 H 0.44 6.81 8.96 -182.72 -1.64 5.17 15 13 N -0.32 -5.62 12.71 33.68 0.43 -5.19 15 14 C 0.07 1.08 6.87 -82.32 -0.57 0.51 15 15 C -0.24 -4.45 5.85 -104.93 -0.61 -5.06 15 16 C -0.33 -5.60 6.38 36.22 0.23 -5.37 15 17 S 1.23 16.24 13.67 -107.50 -1.47 14.77 15 18 O -0.87 -16.60 18.14 -35.23 -0.64 -17.24 15 19 C -0.43 -5.13 6.42 37.00 0.24 -4.89 15 20 C -0.01 -0.08 6.06 -28.07 -0.17 -0.25 15 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.05 1.24 7.53 -51.93 -0.39 0.85 15 24 H 0.12 2.01 7.60 -51.93 -0.39 1.61 15 25 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.09 0.78 8.14 -51.92 -0.42 0.36 15 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 LS Contribution 262.78 15.07 3.96 3.96 Total: -1.00 -33.92 262.78 -8.23 -42.15 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.50 Total: 1.20 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.97 Total: -23.24 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 1.41 Total: -37.58 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.64 Total: -17.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 16.24 SS G_CDS: -1.47 Total: 14.77 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.92 -8.23 -42.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.447 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds