Wall clock time and date at job start Mon Mar 30 2020 03:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99588 * 2 1 4 4 H 1.48505 * 109.46954 * 269.99715 * 3 2 1 5 5 H 1.48502 * 109.47332 * 29.99225 * 3 2 1 6 6 H 1.48492 * 109.47143 * 149.99676 * 3 2 1 7 7 C 1.37874 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47270 * 179.97438 * 9 7 2 11 11 N 1.34867 * 126.16514 * 264.98374 * 10 9 7 12 12 H 0.96999 * 126.05707 * 0.05345 * 11 10 9 13 13 N 1.39937 * 107.88114 * 180.02562 * 11 10 9 14 14 C 1.31418 * 108.37685 * 0.07679 * 13 11 10 15 15 C 1.35431 * 126.15947 * 84.99862 * 10 9 7 16 16 C 1.51144 * 125.08127 * 359.79376 * 15 10 9 17 17 S 1.81822 * 108.32709 * 162.38264 * 16 15 10 18 18 O 1.42105 * 109.46854 * 161.14154 * 17 16 15 19 19 C 1.81791 * 101.80779 * 45.35022 * 17 16 15 20 20 C 1.50636 * 124.31204 * 179.56918 * 14 13 11 21 21 H 0.96997 * 120.00218 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47233 * 60.00150 * 9 7 2 23 23 H 1.08996 * 109.47815 * 299.99912 * 9 7 2 24 24 H 1.09004 * 109.69233 * 42.67868 * 16 15 10 25 25 H 1.08998 * 109.73083 * 282.10975 * 16 15 10 26 26 H 1.09000 * 109.54789 * 53.82427 * 19 17 16 27 27 H 1.09003 * 109.55219 * 174.11400 * 19 17 16 28 28 H 1.09007 * 109.19526 * 281.11522 * 20 14 13 29 29 H 1.08998 * 109.19701 * 40.43393 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2305 -3.6445 0.0005 11 7 2.6754 -4.3113 -1.0841 12 1 2.4221 -4.1382 -2.0043 13 7 3.5676 -5.2966 -0.6467 14 6 3.6547 -5.2249 0.6626 15 6 2.8223 -4.1899 1.0898 16 6 2.6046 -3.7365 2.5151 17 16 3.1705 -5.0581 3.6282 18 8 3.3914 -4.5223 4.9257 19 6 4.7640 -5.5158 2.8823 20 6 4.5125 -6.1303 1.5074 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6242 -2.5568 0.8902 24 1 1.5446 -3.5448 2.6818 25 1 3.1762 -2.8278 2.7036 26 1 5.3851 -4.6266 2.7748 27 1 5.2701 -6.2411 3.5195 28 1 4.0079 -7.0885 1.6317 29 1 5.4668 -6.2905 1.0058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056072.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:51 Heat of formation + Delta-G solvation = -5.984860 kcal Electronic energy + Delta-G solvation = -14955.921873 eV Core-core repulsion = 12391.527774 eV Total energy + Delta-G solvation = -2564.394099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.20847 -36.86282 -35.81916 -35.21410 -33.34643 -31.63805 -29.79055 -27.28391 -25.12956 -24.97407 -21.14428 -20.31448 -18.66208 -18.26721 -17.84227 -16.64364 -16.40365 -16.14848 -15.63998 -15.12562 -14.84542 -14.49924 -14.36450 -14.09030 -13.60120 -13.33778 -13.19187 -12.82194 -12.68978 -12.60933 -12.38649 -11.97784 -11.67166 -11.54359 -10.87321 -10.67246 -10.04686 -9.38001 -9.06893 -8.29418 -6.41359 0.71312 1.04249 1.33234 1.35667 1.45063 1.62796 1.83012 2.06189 2.34504 2.86347 3.03297 3.71071 3.86881 4.12909 4.27716 4.33588 4.46404 4.65221 4.74280 4.88739 5.04447 5.11059 5.15522 5.23930 5.59103 5.64394 5.83729 6.01752 6.49238 6.67791 6.84795 7.27488 8.79412 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.007843 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.790340 B = 3569.211597 C = 4174.073772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.046 0.954 9 C 0.080 3.920 10 C 0.132 3.868 11 N -0.472 5.472 12 H 0.444 0.556 13 N -0.320 5.320 14 C 0.073 3.927 15 C -0.246 4.246 16 C -0.345 4.345 17 S 1.306 4.694 18 O -0.922 6.922 19 C -0.428 4.428 20 C -0.007 4.007 21 H 0.268 0.732 22 H 0.020 0.980 23 H 0.034 0.966 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.139 0.861 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -14.037 2.012 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.041 3.959 10 C 0.001 3.999 11 N -0.180 5.180 12 H 0.289 0.711 13 N -0.144 5.144 14 C -0.093 4.093 15 C -0.257 4.257 16 C -0.482 4.482 17 S 1.507 4.493 18 O -0.918 6.918 19 C -0.568 4.568 20 C -0.046 4.046 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.132 0.868 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.247 -14.896 1.817 15.898 hybrid contribution 1.066 3.892 -0.134 4.037 sum 6.313 -11.005 1.682 12.798 Atomic orbital electron populations 1.70012 1.07154 1.28144 1.50495 1.25699 0.95689 1.02414 0.94474 0.85589 0.78445 0.79285 0.78612 1.19431 1.20293 1.20124 1.21148 0.92684 0.91126 1.51907 0.93609 1.17776 0.91835 0.88309 0.97957 1.21587 0.96952 0.93779 0.87535 1.46079 1.36034 1.26972 1.08910 0.71104 1.77217 1.13197 1.11613 1.12349 1.22751 0.97634 0.96844 0.92096 1.18786 1.08894 1.04420 0.93650 1.25890 1.08381 1.11953 1.01985 1.69743 0.97565 1.02916 0.79105 1.92936 1.85199 1.80975 1.32655 1.27337 1.16739 1.07539 1.05172 1.19540 0.99287 0.96803 0.89015 0.92280 0.96155 0.94797 0.86792 0.92224 0.90896 0.83062 0.84314 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 13.29 21.45 0.28 -52.05 15 2 C 0.02 0.93 5.46 84.65 0.46 1.40 15 3 Si 0.96 43.54 29.54 68.60 2.03 45.56 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.53 -28.82 9.09 25.60 0.23 -28.59 15 8 H 0.05 2.54 7.74 -2.92 -0.02 2.52 15 9 C 0.08 3.89 5.23 29.10 0.15 4.05 15 10 C 0.13 5.42 6.40 41.44 0.27 5.69 15 11 N -0.47 -16.94 7.35 -47.98 -0.35 -17.29 15 12 H 0.44 13.87 8.96 -213.43 -1.91 11.96 15 13 N -0.32 -10.65 12.71 -47.37 -0.60 -11.25 15 14 C 0.07 2.20 6.87 42.91 0.29 2.49 15 15 C -0.25 -8.85 5.85 -20.06 -0.12 -8.97 15 16 C -0.34 -11.92 6.38 71.38 0.46 -11.47 15 17 S 1.31 32.11 13.67 -56.49 -0.77 31.34 15 18 O -0.92 -34.35 18.14 -148.98 -2.70 -37.06 15 19 C -0.43 -8.40 6.42 71.88 0.46 -7.93 15 20 C -0.01 -0.13 6.06 29.72 0.18 0.05 15 21 H 0.27 14.41 8.31 -92.71 -0.77 13.64 15 22 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 23 H 0.03 1.74 7.53 -2.39 -0.02 1.72 15 24 H 0.11 3.99 7.60 -2.38 -0.02 3.97 15 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.15 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.14 1.43 8.14 -2.38 -0.02 1.41 15 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 Total: -1.00 -74.19 262.78 -0.47 -74.66 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -0.74 Total: 9.37 kcal Atomic # 6 Polarization: -45.67 SS G_CDS: 2.39 Total: -43.28 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -0.67 Total: -80.59 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -2.70 Total: -37.06 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 32.11 SS G_CDS: -0.77 Total: 31.34 kcal Total: -74.19 -0.47 -74.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056072.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.672 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds