Wall clock time and date at job start Mon Mar 30 2020 03:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48498 * 109.46885 * 239.99725 * 3 2 1 5 5 H 1.48496 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46999 * 119.99847 * 3 2 1 7 7 C 1.37877 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47349 * 179.97438 * 9 7 2 11 11 N 1.29408 * 125.69707 * 89.97302 * 10 9 7 12 12 N 1.26395 * 116.47680 * 180.02562 * 11 10 9 13 13 C 1.29412 * 116.47621 * 359.97438 * 12 11 10 14 14 C 1.50700 * 125.70094 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.54401 * 181.18320 * 14 13 12 16 16 C 1.54810 * 110.49004 * 303.80764 * 14 13 12 17 17 C 1.54991 * 102.09350 * 139.55527 * 16 14 13 18 18 O 1.44378 * 103.49061 * 322.97120 * 17 16 14 19 19 C 1.43745 * 106.97348 * 40.06796 * 18 17 16 20 20 S 1.71217 * 125.69373 * 270.28423 * 10 9 7 21 21 H 0.97003 * 120.00650 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47361 * 59.99244 * 9 7 2 23 23 H 1.09005 * 109.46846 * 299.99455 * 9 7 2 24 24 H 1.09005 * 110.90592 * 257.75502 * 16 14 13 25 25 H 1.09001 * 110.90204 * 21.31979 * 16 14 13 26 26 H 1.08993 * 110.62131 * 81.47823 * 17 16 14 27 27 H 1.09004 * 110.61350 * 204.31822 * 17 16 14 28 28 H 1.09004 * 109.88020 * 214.06063 * 19 18 17 29 29 H 1.09000 * 109.88175 * 92.90294 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.7215 -4.2182 1.0515 12 7 3.5326 -5.1662 0.8489 13 6 3.7816 -5.4583 -0.3869 14 6 4.7112 -6.5444 -0.8637 15 1 4.7526 -6.5616 -1.9528 16 6 6.1272 -6.3446 -0.2707 17 6 6.5427 -7.7973 0.0744 18 8 5.3136 -8.3988 0.5350 19 6 4.2637 -7.9149 -0.3193 20 16 2.8849 -4.3994 -1.3900 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 6.8013 -5.9124 -1.0104 25 1 6.0895 -5.7266 0.6264 26 1 6.9130 -8.3116 -0.8124 27 1 7.2952 -7.8042 0.8630 28 1 3.3423 -7.8037 0.2523 29 1 4.1084 -8.6090 -1.1453 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:30 Heat of formation + Delta-G solvation = 4.196306 kcal Electronic energy + Delta-G solvation = -14494.922174 eV Core-core repulsion = 11930.969563 eV Total energy + Delta-G solvation = -2563.952611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.78476 -39.24057 -34.09427 -33.11611 -31.04935 -29.65164 -27.73153 -25.47478 -23.34916 -22.73790 -21.69254 -18.77738 -18.65047 -16.66810 -16.51210 -16.13885 -15.28069 -14.92567 -14.73170 -14.18323 -13.32870 -13.01536 -12.67087 -12.47158 -11.95844 -11.77391 -11.67350 -11.45855 -11.08595 -10.97935 -10.82187 -10.27552 -9.94619 -9.79072 -9.70016 -9.50692 -9.15233 -8.71920 -8.58963 -6.23250 -4.29241 1.07223 1.49293 2.01617 3.18115 3.24168 3.28484 3.32882 3.79965 4.22819 4.31128 4.50331 4.76012 4.88919 5.00015 5.07415 5.12498 5.38547 5.54808 5.59114 5.61741 5.79665 5.83797 6.03062 6.28416 6.74006 7.12408 7.25473 7.69303 7.97618 8.71453 9.22469 9.35611 10.86904 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050544 B = 0.005395 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.843624 B = 5188.907270 C = 5371.942552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.088 3.912 10 C 0.064 3.936 11 N -0.286 5.286 12 N -0.251 5.251 13 C -0.055 4.055 14 C -0.032 4.032 15 H 0.102 0.898 16 C -0.143 4.143 17 C 0.049 3.951 18 O -0.372 6.372 19 C 0.064 3.936 20 S 0.130 5.870 21 H 0.267 0.733 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -12.320 -5.762 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.214 4.214 11 N -0.123 5.123 12 N -0.087 5.087 13 C -0.335 4.335 14 C -0.055 4.055 15 H 0.120 0.880 16 C -0.183 4.183 17 C -0.028 4.028 18 O -0.290 6.290 19 C -0.015 4.015 20 S 0.376 5.624 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.079 -12.373 -5.218 16.210 hybrid contribution 0.421 1.199 -0.140 1.278 sum 9.500 -11.174 -5.358 15.615 Atomic orbital electron populations 1.69915 1.06044 1.27577 1.49080 1.24951 0.94977 0.99386 0.94462 0.86463 0.79510 0.82086 0.78928 1.19967 1.20918 1.19919 1.20822 0.93022 0.89024 1.53134 0.92317 1.18144 0.90801 0.86189 1.00208 1.30328 1.00934 1.00920 0.89208 1.71517 1.08791 1.05311 1.26636 1.71308 1.10532 1.09856 1.17053 1.28509 1.06532 1.04766 0.93677 1.20966 0.92771 0.91236 1.00548 0.88004 1.23252 0.94005 0.98448 1.02565 1.23539 0.88179 0.91336 0.99753 1.88895 1.16292 1.68898 1.54956 1.23175 0.92313 0.91721 0.94290 1.83549 1.38204 1.26312 1.14370 0.92296 0.93428 0.92262 0.89720 0.89207 0.92097 0.88742 0.89273 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 13.29 55.43 0.74 -24.43 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.21 9.09 -34.44 -0.31 -14.52 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.09 2.20 5.58 -29.04 -0.16 2.04 15 10 C 0.06 1.42 6.72 -13.30 -0.09 1.33 15 11 N -0.29 -6.64 11.66 32.58 0.38 -6.26 15 12 N -0.25 -5.15 11.41 32.58 0.37 -4.78 15 13 C -0.05 -0.92 5.84 -13.30 -0.08 -1.00 15 14 C -0.03 -0.40 3.56 -90.24 -0.32 -0.72 15 15 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 16 C -0.14 -1.62 6.70 -24.73 -0.17 -1.79 15 17 C 0.05 0.49 7.72 38.21 0.29 0.79 15 18 O -0.37 -5.01 11.52 -35.23 -0.41 -5.41 15 19 C 0.06 0.78 7.36 37.74 0.28 1.06 15 20 S 0.13 2.27 23.04 -107.50 -2.48 -0.21 15 21 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 22 H 0.05 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.06 1.59 8.14 -51.93 -0.42 1.17 15 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.09 1.25 7.68 -51.93 -0.40 0.85 15 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 15 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.09 1.25 7.68 -51.93 -0.40 0.85 15 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -30.54 268.20 -6.33 -36.86 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: -3.30 Total: -4.65 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.65 Total: -11.12 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 1.49 Total: -35.47 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.41 Total: -5.41 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.48 Total: -0.21 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.54 -6.33 -36.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.059 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds