Wall clock time and date at job start Mon Mar 30 2020 03:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48498 * 109.46885 * 239.99725 * 3 2 1 5 5 H 1.48496 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46999 * 119.99847 * 3 2 1 7 7 C 1.37877 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00003 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00164 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47349 * 179.97438 * 9 7 2 11 11 N 1.29408 * 125.69707 * 89.97302 * 10 9 7 12 12 N 1.26395 * 116.47680 * 180.02562 * 11 10 9 13 13 C 1.29412 * 116.47621 * 359.97438 * 12 11 10 14 14 C 1.50700 * 125.70094 * 179.97438 * 13 12 11 15 15 H 1.09000 * 110.54401 * 181.18320 * 14 13 12 16 16 C 1.54810 * 110.49004 * 303.80764 * 14 13 12 17 17 C 1.54991 * 102.09350 * 139.55527 * 16 14 13 18 18 O 1.44378 * 103.49061 * 322.97120 * 17 16 14 19 19 C 1.43745 * 106.97348 * 40.06796 * 18 17 16 20 20 S 1.71217 * 125.69373 * 270.28423 * 10 9 7 21 21 H 0.97003 * 120.00650 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47361 * 59.99244 * 9 7 2 23 23 H 1.09005 * 109.46846 * 299.99455 * 9 7 2 24 24 H 1.09005 * 110.90592 * 257.75502 * 16 14 13 25 25 H 1.09001 * 110.90204 * 21.31979 * 16 14 13 26 26 H 1.08993 * 110.62131 * 81.47823 * 17 16 14 27 27 H 1.09004 * 110.61350 * 204.31822 * 17 16 14 28 28 H 1.09004 * 109.88020 * 214.06063 * 19 18 17 29 29 H 1.09000 * 109.88175 * 92.90294 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.7215 -4.2182 1.0515 12 7 3.5326 -5.1662 0.8489 13 6 3.7816 -5.4583 -0.3869 14 6 4.7112 -6.5444 -0.8637 15 1 4.7526 -6.5616 -1.9528 16 6 6.1272 -6.3446 -0.2707 17 6 6.5427 -7.7973 0.0744 18 8 5.3136 -8.3988 0.5350 19 6 4.2637 -7.9149 -0.3193 20 16 2.8849 -4.3994 -1.3900 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 6.8013 -5.9124 -1.0104 25 1 6.0895 -5.7266 0.6264 26 1 6.9130 -8.3116 -0.8124 27 1 7.2952 -7.8042 0.8630 28 1 3.3423 -7.8037 0.2523 29 1 4.1084 -8.6090 -1.1453 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:27 Heat of formation + Delta-G solvation = -17.128645 kcal Electronic energy + Delta-G solvation = -14495.846893 eV Core-core repulsion = 11930.969563 eV Total energy + Delta-G solvation = -2564.877330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -42.31248 -40.22435 -35.88016 -34.55618 -32.68264 -30.72892 -29.27414 -27.10985 -25.07494 -23.76126 -22.89780 -20.25898 -20.07577 -18.71492 -17.57129 -17.17397 -16.65321 -16.52079 -16.14739 -15.37723 -14.84631 -14.42860 -14.23550 -13.88925 -13.65015 -13.09765 -12.96224 -12.69214 -12.60959 -12.38304 -12.11464 -11.96810 -11.81151 -11.31324 -11.07930 -10.81731 -10.66351 -10.56329 -10.30841 -8.31358 -6.45501 -0.43692 0.01879 0.47465 1.38882 1.41845 1.49713 1.61162 2.35979 2.85329 3.02038 3.09286 3.54062 3.70453 3.83808 4.00475 4.14741 4.30386 4.37485 4.67129 4.72594 4.76473 4.85817 4.89998 5.08739 5.11836 5.20816 5.57698 5.89552 5.92350 6.60617 7.23361 7.66649 8.79153 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050544 B = 0.005395 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.843624 B = 5188.907270 C = 5371.942552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.098 3.902 10 C 0.014 3.986 11 N -0.316 5.316 12 N -0.286 5.286 13 C -0.033 4.033 14 C -0.038 4.038 15 H 0.144 0.856 16 C -0.143 4.143 17 C 0.049 3.951 18 O -0.401 6.401 19 C 0.064 3.936 20 S 0.211 5.789 21 H 0.271 0.729 22 H 0.042 0.958 23 H 0.025 0.975 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.391 -13.117 -7.867 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.264 4.264 11 N -0.153 5.153 12 N -0.123 5.123 13 C -0.313 4.313 14 C -0.061 4.061 15 H 0.161 0.839 16 C -0.182 4.182 17 C -0.027 4.027 18 O -0.320 6.320 19 C -0.014 4.014 20 S 0.457 5.543 21 H 0.080 0.920 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.208 -13.173 -7.330 18.785 hybrid contribution -0.172 1.300 0.472 1.393 sum 11.036 -11.874 -6.858 17.602 Atomic orbital electron populations 1.70019 1.07485 1.28659 1.49674 1.25824 0.95825 1.02892 0.93810 0.85452 0.78380 0.77809 0.79184 1.18544 1.20004 1.20006 1.21089 0.92919 0.90462 1.53349 0.92915 1.17739 0.91022 0.87220 0.98321 1.29782 1.02522 1.01971 0.92098 1.71469 1.09400 1.06099 1.28328 1.71287 1.11636 1.10321 1.19028 1.29398 1.04908 1.04231 0.92723 1.21423 0.92149 0.89584 1.02896 0.83859 1.23276 0.93832 0.99140 1.01952 1.23759 0.87137 0.90366 1.01432 1.88868 1.17681 1.69336 1.56114 1.23217 0.91155 0.92278 0.94773 1.83070 1.36300 1.24295 1.10652 0.91968 0.94029 0.95692 0.86691 0.92492 0.88736 0.87998 0.91975 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.14 13.29 21.45 0.28 -52.86 15 2 C 0.02 0.93 5.46 84.66 0.46 1.39 15 3 Si 0.97 43.00 29.54 68.60 2.03 45.02 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 7 C -0.54 -30.15 9.09 25.60 0.23 -29.92 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 9 C 0.10 5.14 5.58 29.10 0.16 5.30 15 10 C 0.01 0.66 6.72 88.47 0.59 1.25 15 11 N -0.32 -15.14 11.66 -50.85 -0.59 -15.73 15 12 N -0.29 -11.88 11.41 -50.85 -0.58 -12.46 15 13 C -0.03 -1.04 5.84 88.46 0.52 -0.52 15 14 C -0.04 -0.81 3.56 -10.55 -0.04 -0.84 15 15 H 0.14 1.94 8.14 -2.39 -0.02 1.92 15 16 C -0.14 -2.79 6.70 31.89 0.21 -2.57 15 17 C 0.05 0.82 7.72 72.66 0.56 1.38 15 18 O -0.40 -9.90 11.52 -148.98 -1.72 -11.62 15 19 C 0.06 1.40 7.36 72.36 0.53 1.93 15 20 S 0.21 6.99 23.04 -56.49 -1.30 5.69 15 21 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 22 H 0.04 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.02 1.44 8.14 -2.38 -0.02 1.42 15 24 H 0.11 1.55 8.14 -2.38 -0.02 1.53 15 25 H 0.06 1.51 7.68 -2.39 -0.02 1.49 15 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 15 27 H 0.10 1.54 8.14 -2.38 -0.02 1.52 15 28 H 0.06 1.68 7.68 -2.39 -0.02 1.66 15 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 Total: -1.00 -68.87 268.20 2.51 -66.35 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: 1.16 Total: -1.81 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.24 Total: -22.59 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -0.89 Total: -81.05 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.72 Total: -11.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.30 Total: 5.69 kcal Total: -68.87 2.51 -66.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.225 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds