Wall clock time and date at job start Mon Mar 30 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86806 * 120.00218 * 2 1 4 4 H 1.48498 * 109.46814 * 274.98209 * 3 2 1 5 5 H 1.48502 * 109.46841 * 34.97741 * 3 2 1 6 6 H 1.48500 * 109.47197 * 154.97937 * 3 2 1 7 7 C 1.40251 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00160 * 186.03250 * 7 2 1 9 9 C 1.40059 * 119.99963 * 6.04307 * 7 2 1 10 10 N 1.32119 * 126.21551 * 354.25414 * 9 7 2 11 11 N 1.26272 * 115.91349 * 179.72042 * 10 9 7 12 12 C 1.30069 * 117.85354 * 0.53947 * 11 10 9 13 13 C 1.50703 * 125.43232 * 179.75607 * 12 11 10 14 14 H 1.08999 * 109.52002 * 179.82293 * 13 12 11 15 15 C 1.53177 * 109.52383 * 59.69741 * 13 12 11 16 16 C 1.53179 * 109.03763 * 183.11068 * 15 13 12 17 17 C 1.53099 * 109.15888 * 56.98284 * 16 15 13 18 18 O 1.42901 * 109.41383 * 302.38703 * 17 16 15 19 19 C 1.42904 * 114.09847 * 61.16432 * 18 17 16 20 20 S 1.71234 * 109.13437 * 359.49496 * 12 11 10 21 21 H 0.97007 * 119.99544 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.54210 * 63.24612 * 15 13 12 23 23 H 1.09001 * 109.61709 * 303.02994 * 15 13 12 24 24 H 1.08988 * 109.52216 * 297.07704 * 16 15 13 25 25 H 1.08999 * 109.51927 * 176.88527 * 16 15 13 26 26 H 1.09003 * 109.47745 * 182.40727 * 17 16 15 27 27 H 1.08992 * 109.48110 * 62.37207 * 17 16 15 28 28 H 1.08999 * 109.48211 * 58.81656 * 19 18 17 29 29 H 1.09001 * 109.48527 * 178.85836 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.3833 2.1072 -1.3948 5 1 1.4951 2.6200 0.8026 6 1 3.5873 1.4121 0.5921 7 6 2.0082 -1.2146 0.0005 8 1 3.0837 -1.2172 0.0988 9 6 1.3137 -2.4242 -0.1266 10 7 0.0010 -2.5722 -0.1474 11 7 -0.4189 -3.7560 -0.2763 12 6 0.4634 -4.7076 -0.3645 13 6 0.1540 -6.1747 -0.5163 14 1 1.0847 -6.7397 -0.5680 15 6 -0.6522 -6.3977 -1.7995 16 6 -1.0270 -7.8793 -1.9029 17 6 -1.8046 -8.2895 -0.6495 18 8 -1.0103 -8.0275 0.5092 19 6 -0.6691 -6.6508 0.6835 20 16 2.0327 -4.0267 -0.2879 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0502 -6.1128 -2.6624 23 1 -1.5587 -5.7932 -1.7718 24 1 -0.1208 -8.4796 -1.9821 25 1 -1.6480 -8.0372 -2.7847 26 1 -2.0370 -9.3534 -0.6979 27 1 -2.7305 -7.7172 -0.5926 28 1 -1.5801 -6.0570 0.7578 29 1 -0.0835 -6.5340 1.5954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260094782.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:23 Heat of formation + Delta-G solvation = -19.205308 kcal Electronic energy + Delta-G solvation = -14792.352668 eV Core-core repulsion = 12227.385287 eV Total energy + Delta-G solvation = -2564.967381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.27315 -38.39136 -34.37607 -33.53379 -31.54644 -29.40694 -26.52833 -24.65604 -24.03943 -22.48960 -20.55331 -19.12424 -17.34607 -16.76013 -15.67541 -15.58220 -15.26529 -14.45953 -14.26859 -13.78086 -13.44357 -13.07613 -12.39743 -12.22984 -11.91335 -11.58470 -11.46230 -11.34633 -10.97176 -10.76103 -10.68850 -10.35402 -10.09258 -9.80481 -9.26827 -8.69082 -8.21265 -8.15007 -7.98199 -7.02487 -4.96357 2.27860 2.76937 2.90590 2.93744 2.97798 3.25608 3.66766 4.14564 4.20386 4.95417 5.06947 5.13524 5.24788 5.45334 5.54154 5.66767 5.76375 5.97677 6.04806 6.10816 6.18292 6.28978 6.53805 6.57197 6.67511 6.89077 7.24664 7.48273 7.80808 7.91348 8.24176 9.80545 10.72476 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.060790 B = 0.005759 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.489182 B = 4860.591812 C = 4988.144678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.064 3.936 3 Si 0.929 3.071 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.365 4.365 8 H 0.100 0.900 9 C 0.176 3.824 10 N -0.342 5.342 11 N -0.225 5.225 12 C -0.142 4.142 13 C -0.002 4.002 14 H 0.075 0.925 15 C -0.108 4.108 16 C -0.154 4.154 17 C 0.060 3.940 18 O -0.389 6.389 19 C 0.074 3.926 20 S -0.111 6.111 21 H 0.289 0.711 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 -6.505 -1.801 6.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.167 4.167 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.409 4.409 8 H 0.118 0.882 9 C -0.073 4.073 10 N -0.192 5.192 11 N -0.066 5.066 12 C -0.422 4.422 13 C -0.025 4.025 14 H 0.094 0.906 15 C -0.147 4.147 16 C -0.192 4.192 17 C -0.016 4.016 18 O -0.307 6.307 19 C -0.003 4.003 20 S 0.134 5.866 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.052 -6.517 -1.663 6.726 hybrid contribution 0.386 0.967 -0.286 1.079 sum 0.334 -5.550 -1.949 5.891 Atomic orbital electron populations 1.69959 1.07627 1.29997 1.24128 1.26223 0.95209 1.01569 0.93746 0.85944 0.80343 0.78990 0.79651 1.18827 1.19438 1.17897 1.19105 0.95437 0.87977 1.38400 0.88215 1.26016 0.91245 0.93534 0.96521 1.72833 1.07605 1.07659 1.31108 1.70691 1.32626 0.95830 1.07444 1.26779 0.90735 0.99286 1.25405 1.19692 0.98557 0.88789 0.95471 0.90620 1.21601 1.00739 0.94905 0.97490 1.22222 1.01068 0.97523 0.98410 1.22530 0.93257 1.00562 0.85297 1.87877 1.71795 1.26602 1.44457 1.22647 0.98855 0.81101 0.97727 1.83804 1.14510 1.08449 1.79859 0.89953 0.91829 0.91063 0.91373 0.91211 0.89474 0.93272 0.92276 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.75 11.95 55.56 0.66 -17.09 15 2 C 0.06 1.52 5.49 -17.28 -0.09 1.43 15 3 Si 0.93 16.96 29.57 -169.99 -5.03 11.93 15 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 7 C -0.37 -9.22 9.42 -38.14 -0.36 -9.58 15 8 H 0.10 2.28 7.86 -52.49 -0.41 1.87 15 9 C 0.18 4.78 7.18 -16.75 -0.12 4.66 15 10 N -0.34 -9.87 9.97 31.56 0.31 -9.56 15 11 N -0.23 -6.01 11.60 32.68 0.38 -5.64 15 12 C -0.14 -3.34 6.04 -13.02 -0.08 -3.42 15 13 C 0.00 -0.04 2.83 -91.63 -0.26 -0.30 15 14 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 15 C -0.11 -1.83 5.29 -26.55 -0.14 -1.97 15 16 C -0.15 -2.05 6.14 -26.59 -0.16 -2.21 15 17 C 0.06 0.81 6.84 37.21 0.25 1.06 15 18 O -0.39 -6.41 10.77 -35.23 -0.38 -6.79 15 19 C 0.07 1.34 6.11 37.21 0.23 1.56 15 20 S -0.11 -2.62 23.23 -107.50 -2.50 -5.12 15 21 H 0.29 6.51 8.29 -40.82 -0.34 6.17 15 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.07 0.87 8.14 -51.94 -0.42 0.45 15 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 29 H 0.09 1.62 8.14 -51.93 -0.42 1.19 15 LS Contribution 263.17 15.07 3.97 3.97 Total: -1.00 -29.26 263.17 -6.67 -35.93 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -3.35 Total: 1.13 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.73 Total: -8.76 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 1.36 Total: -32.28 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.38 Total: -6.79 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.50 Total: -5.12 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.26 -6.67 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094782.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.723 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds