Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86806 * 120.00218 * 2 1 4 4 H 1.48498 * 109.46814 * 274.98209 * 3 2 1 5 5 H 1.48502 * 109.46841 * 34.97741 * 3 2 1 6 6 H 1.48500 * 109.47197 * 154.97937 * 3 2 1 7 7 C 1.40251 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00160 * 186.03250 * 7 2 1 9 9 C 1.40059 * 119.99963 * 6.04307 * 7 2 1 10 10 N 1.32119 * 126.21551 * 354.25414 * 9 7 2 11 11 N 1.26272 * 115.91349 * 179.72042 * 10 9 7 12 12 C 1.30069 * 117.85354 * 0.53947 * 11 10 9 13 13 C 1.50703 * 125.43232 * 179.75607 * 12 11 10 14 14 H 1.08999 * 109.52002 * 179.82293 * 13 12 11 15 15 C 1.53177 * 109.52383 * 59.69741 * 13 12 11 16 16 C 1.53179 * 109.03763 * 183.11068 * 15 13 12 17 17 C 1.53099 * 109.15888 * 56.98284 * 16 15 13 18 18 O 1.42901 * 109.41383 * 302.38703 * 17 16 15 19 19 C 1.42904 * 114.09847 * 61.16432 * 18 17 16 20 20 S 1.71234 * 109.13437 * 359.49496 * 12 11 10 21 21 H 0.97007 * 119.99544 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.54210 * 63.24612 * 15 13 12 23 23 H 1.09001 * 109.61709 * 303.02994 * 15 13 12 24 24 H 1.08988 * 109.52216 * 297.07704 * 16 15 13 25 25 H 1.08999 * 109.51927 * 176.88527 * 16 15 13 26 26 H 1.09003 * 109.47745 * 182.40727 * 17 16 15 27 27 H 1.08992 * 109.48110 * 62.37207 * 17 16 15 28 28 H 1.08999 * 109.48211 * 58.81656 * 19 18 17 29 29 H 1.09001 * 109.48527 * 178.85836 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.3833 2.1072 -1.3948 5 1 1.4951 2.6200 0.8026 6 1 3.5873 1.4121 0.5921 7 6 2.0082 -1.2146 0.0005 8 1 3.0837 -1.2172 0.0988 9 6 1.3137 -2.4242 -0.1266 10 7 0.0010 -2.5722 -0.1474 11 7 -0.4189 -3.7560 -0.2763 12 6 0.4634 -4.7076 -0.3645 13 6 0.1540 -6.1747 -0.5163 14 1 1.0847 -6.7397 -0.5680 15 6 -0.6522 -6.3977 -1.7995 16 6 -1.0270 -7.8793 -1.9029 17 6 -1.8046 -8.2895 -0.6495 18 8 -1.0103 -8.0275 0.5092 19 6 -0.6691 -6.6508 0.6835 20 16 2.0327 -4.0267 -0.2879 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0502 -6.1128 -2.6624 23 1 -1.5587 -5.7932 -1.7718 24 1 -0.1208 -8.4796 -1.9821 25 1 -1.6480 -8.0372 -2.7847 26 1 -2.0370 -9.3534 -0.6979 27 1 -2.7305 -7.7172 -0.5926 28 1 -1.5801 -6.0570 0.7578 29 1 -0.0835 -6.5340 1.5954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260094782.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = -38.813781 kcal Electronic energy + Delta-G solvation = -14793.202955 eV Core-core repulsion = 12227.385287 eV Total energy + Delta-G solvation = -2565.817668 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96611 -39.97919 -36.15804 -35.01961 -32.91912 -31.23476 -28.33271 -26.00395 -25.78124 -24.06575 -22.09051 -20.78631 -19.24462 -18.46449 -17.12608 -17.01479 -16.83297 -15.94061 -15.72297 -15.44266 -14.96843 -14.59870 -13.88707 -13.82015 -13.53293 -13.21156 -13.01952 -12.96933 -12.48094 -12.11046 -12.04118 -11.80742 -11.53553 -11.31938 -10.77358 -10.48613 -10.14503 -10.10630 -9.88441 -8.80962 -6.91394 0.41190 0.91110 1.30015 1.39269 1.48911 1.58996 2.12647 2.33661 2.89445 3.04451 3.73009 3.85780 3.94588 4.06960 4.19918 4.28696 4.48631 4.66031 4.71822 4.76367 4.86271 4.93533 5.02793 5.04044 5.16970 5.31670 5.46310 5.89921 6.03378 6.20469 6.35090 8.06822 8.75459 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.060790 B = 0.005759 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.489182 B = 4860.591812 C = 4988.144678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.020 3.980 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.243 1.243 7 C -0.384 4.384 8 H 0.117 0.883 9 C 0.138 3.862 10 N -0.389 5.389 11 N -0.259 5.259 12 C -0.126 4.126 13 C -0.005 4.005 14 H 0.087 0.913 15 C -0.106 4.106 16 C -0.144 4.144 17 C 0.051 3.949 18 O -0.393 6.393 19 C 0.085 3.915 20 S -0.088 6.088 21 H 0.299 0.701 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 -7.124 -2.273 7.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.181 1.181 5 H -0.186 1.186 6 H -0.165 1.165 7 C -0.428 4.428 8 H 0.135 0.865 9 C -0.111 4.111 10 N -0.239 5.239 11 N -0.098 5.098 12 C -0.408 4.408 13 C -0.028 4.028 14 H 0.105 0.895 15 C -0.145 4.145 16 C -0.181 4.181 17 C -0.025 4.025 18 O -0.312 6.312 19 C 0.007 3.993 20 S 0.157 5.843 21 H 0.110 0.890 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.829 -7.162 -2.137 7.520 hybrid contribution 0.085 1.026 -0.162 1.042 sum 0.914 -6.137 -2.299 6.617 Atomic orbital electron populations 1.70048 1.09803 1.31763 1.24734 1.27425 0.95895 1.05226 0.92150 0.84722 0.79058 0.73229 0.79956 1.18142 1.18594 1.16525 1.19683 0.96452 0.88422 1.38274 0.86479 1.26474 0.91516 0.95488 0.97656 1.72766 1.08933 1.08797 1.33362 1.70635 1.33610 0.96074 1.09452 1.27609 0.90410 1.00853 1.21964 1.19919 0.99712 0.85916 0.97260 0.89492 1.21565 0.99366 0.97649 0.95951 1.22182 1.02074 0.94364 0.99520 1.22853 0.92769 1.02716 0.84134 1.87878 1.72309 1.24957 1.46053 1.22376 0.97847 0.82029 0.97045 1.83528 1.14223 1.06766 1.79743 0.89013 0.92258 0.93000 0.90249 0.88468 0.86004 0.93243 0.93908 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.69 11.95 21.88 0.26 -38.42 15 2 C 0.02 0.97 5.49 85.35 0.47 1.44 15 3 Si 1.01 33.92 29.57 68.60 2.03 35.95 15 4 H -0.26 -8.30 7.11 99.48 0.71 -7.59 15 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 6 H -0.24 -7.54 7.11 99.48 0.71 -6.83 15 7 C -0.38 -19.58 9.42 23.20 0.22 -19.36 15 8 H 0.12 5.31 7.86 -2.91 -0.02 5.29 15 9 C 0.14 7.67 7.18 85.09 0.61 8.28 15 10 N -0.39 -23.28 9.97 -54.06 -0.54 -23.82 15 11 N -0.26 -14.30 11.60 -50.52 -0.59 -14.88 15 12 C -0.13 -6.00 6.04 88.37 0.53 -5.46 15 13 C 0.00 -0.18 2.83 -11.45 -0.03 -0.22 15 14 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15 15 C -0.11 -3.48 5.29 30.71 0.16 -3.32 15 16 C -0.14 -3.39 6.14 30.69 0.19 -3.20 15 17 C 0.05 1.23 6.84 72.02 0.49 1.72 15 18 O -0.39 -12.20 10.77 -148.98 -1.60 -13.80 15 19 C 0.09 3.03 6.11 72.01 0.44 3.47 15 20 S -0.09 -4.18 23.23 -56.49 -1.31 -5.49 15 21 H 0.30 13.69 8.29 -92.70 -0.77 12.93 15 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.12 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 15 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 Total: -1.00 -65.08 263.17 2.49 -62.59 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.15 Total: 14.53 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 3.08 Total: -16.65 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -0.86 Total: -77.12 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.60 Total: -13.80 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.03 Total: 35.95 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -1.31 Total: -5.49 kcal Total: -65.08 2.49 -62.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260094782.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.777 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds