Wall clock time and date at job start Mon Mar 30 2020 04:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76205 * 100.00343 * 2 1 4 4 N 1.32793 * 119.66865 * 179.97438 * 3 2 1 5 5 C 1.32370 * 119.45622 * 180.02562 * 4 3 2 6 6 C 1.38761 * 118.83355 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.34611 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47354 * 205.00444 * 7 6 5 9 9 C 1.50703 * 109.46886 * 325.00373 * 7 6 5 10 10 H 1.07997 * 120.00606 * 359.97438 * 9 7 6 11 11 C 1.37883 * 119.99615 * 179.97438 * 9 7 6 12 12 N 1.31508 * 120.00165 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99951 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46740 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47330 * 119.99918 * 13 11 9 16 16 H 1.48499 * 109.47337 * 240.00458 * 13 11 9 17 17 C 1.52998 * 109.47070 * 85.00014 * 7 6 5 18 18 N 1.46905 * 109.46978 * 65.00154 * 17 7 6 19 19 N 1.32186 * 119.30858 * 0.25866 * 6 5 4 20 20 N 1.28748 * 120.48282 * 359.49781 * 19 6 5 21 21 H 1.09001 * 109.47001 * 299.99771 * 1 2 3 22 22 H 1.09000 * 109.47126 * 59.99772 * 1 2 3 23 23 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08005 * 120.57904 * 179.97438 * 5 4 3 25 25 H 0.96996 * 120.00304 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.47288 * 305.00054 * 17 7 6 27 27 H 1.08995 * 109.47151 * 185.00114 * 17 7 6 28 28 H 1.00901 * 110.99869 * 180.02562 * 18 17 7 29 29 H 1.00896 * 110.99543 * 303.95346 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3665 2.1821 0.0005 5 6 3.5916 3.4866 0.0010 6 6 2.5075 4.3527 0.0005 7 6 2.7245 5.8440 0.0016 8 1 1.8548 6.3374 0.4354 9 6 3.9478 6.1730 0.8179 10 1 4.5115 5.3815 1.2892 11 6 4.3474 7.4847 0.9632 12 7 3.6613 8.4485 0.3890 13 14 5.8633 7.8926 1.9756 14 1 6.4521 6.6392 2.5122 15 1 6.8609 8.5811 1.1179 16 1 5.4817 8.7815 3.1023 17 6 2.9238 6.3315 -1.4349 18 7 1.6878 6.1192 -2.1999 19 7 1.2825 3.8561 0.0046 20 7 1.0940 2.5825 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 4.6013 3.8699 0.0019 25 1 3.9421 9.3712 0.4915 26 1 3.7380 5.7742 -1.8981 27 1 3.1686 7.3936 -1.4275 28 1 1.7940 6.4330 -3.1530 29 1 1.4044 5.1514 -2.1677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260120229.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:24 Heat of formation + Delta-G solvation = 44.628785 kcal Electronic energy + Delta-G solvation = -14873.397818 eV Core-core repulsion = 12343.491243 eV Total energy + Delta-G solvation = -2529.906576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.75055 -37.64105 -35.99930 -34.27723 -33.74048 -30.58993 -29.61074 -26.88302 -26.32419 -25.48730 -22.16345 -20.06561 -19.54800 -18.34768 -17.22952 -16.94242 -16.33549 -16.20113 -15.73572 -15.30141 -15.13612 -14.43184 -13.96791 -13.69245 -13.44884 -13.18980 -13.12272 -12.88535 -12.72991 -12.58689 -12.31416 -11.89971 -11.66210 -11.51251 -11.13054 -10.61445 -10.27414 -9.45540 -8.90024 -8.16175 -6.34081 -0.57929 -0.41644 0.03963 1.11286 1.45762 1.49628 1.59183 2.30832 2.41561 2.73676 3.07432 3.13783 3.38570 3.90764 4.03623 4.14829 4.30532 4.35975 4.64282 4.80144 4.92136 4.95127 5.44470 5.60273 5.71232 5.78435 6.10368 6.39582 6.62909 6.77297 7.27973 7.36799 8.89090 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035671 B = 0.006620 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.755049 B = 4228.843605 C = 4742.559702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S 0.025 5.975 3 C 0.186 3.814 4 N -0.466 5.466 5 C 0.151 3.849 6 C 0.045 3.955 7 C 0.109 3.891 8 H 0.022 0.978 9 C -0.542 4.542 10 H 0.071 0.929 11 C 0.027 3.973 12 N -0.905 5.905 13 Si 0.960 3.040 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.286 1.286 17 C 0.082 3.918 18 N -0.851 5.851 19 N -0.205 5.205 20 N -0.297 5.297 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.145 0.855 24 H 0.207 0.793 25 H 0.266 0.734 26 H 0.007 0.993 27 H 0.093 0.907 28 H 0.340 0.660 29 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -13.122 -2.497 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.255 5.745 3 C -0.191 4.191 4 N -0.188 5.188 5 C -0.029 4.029 6 C -0.107 4.107 7 C 0.088 3.912 8 H 0.041 0.959 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.175 4.175 12 N -0.542 5.542 13 Si 0.785 3.215 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.212 1.212 17 C -0.049 4.049 18 N -0.381 5.381 19 N -0.054 5.054 20 N -0.148 5.148 21 H 0.105 0.895 22 H 0.108 0.892 23 H 0.163 0.837 24 H 0.224 0.776 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.111 0.889 28 H 0.153 0.847 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.295 -13.889 -1.996 14.218 hybrid contribution 1.195 1.542 -0.042 1.951 sum -1.099 -12.347 -2.038 12.562 Atomic orbital electron populations 1.23740 0.91684 1.08646 1.07111 1.85500 1.09467 0.89505 1.90027 1.27160 0.89845 1.04347 0.97717 1.69273 1.21279 1.15918 1.12372 1.24474 1.02862 0.87737 0.87798 1.24255 0.90895 1.01872 0.93661 1.17598 0.97474 0.81730 0.94445 0.95945 1.21346 1.10941 0.93389 1.32417 0.91048 1.25678 0.99551 0.96028 0.96194 1.70003 1.40178 1.00414 1.43628 0.85464 0.79187 0.78478 0.78323 1.18673 1.20221 1.21225 1.21808 0.87878 1.02971 0.92268 1.58777 1.36194 1.25173 1.17920 1.73544 1.21531 1.04527 1.05835 1.74106 1.28578 0.97954 1.14111 0.89477 0.89220 0.83672 0.77645 0.92422 0.97498 0.88908 0.84723 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.64 113.37 1.09 -1.51 15 2 S 0.03 0.63 22.91 -56.49 -1.29 -0.67 15 3 C 0.19 6.51 7.92 180.29 1.43 7.94 15 4 N -0.47 -17.25 10.51 -195.95 -2.06 -19.31 15 5 C 0.15 5.84 10.11 84.74 0.86 6.70 15 6 C 0.04 1.92 5.10 42.63 0.22 2.14 15 7 C 0.11 5.26 2.33 -12.28 -0.03 5.23 15 8 H 0.02 1.27 8.14 -2.39 -0.02 1.25 15 9 C -0.54 -26.90 7.93 25.60 0.20 -26.69 15 10 H 0.07 3.35 6.37 -2.91 -0.02 3.34 15 11 C 0.03 1.35 5.29 84.66 0.45 1.80 15 12 N -0.90 -48.47 11.29 21.45 0.24 -48.23 15 13 Si 0.96 39.99 29.54 68.60 2.03 42.02 15 14 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 15 H -0.28 -11.25 7.11 99.48 0.71 -10.55 15 16 H -0.29 -12.07 7.11 99.48 0.71 -11.36 15 17 C 0.08 3.71 6.07 86.30 0.52 4.23 15 18 N -0.85 -34.30 9.62 -186.71 -1.80 -36.10 15 19 N -0.21 -8.82 10.98 -47.41 -0.52 -9.34 15 20 N -0.30 -11.34 10.33 -58.27 -0.60 -11.94 15 21 H 0.09 1.74 8.12 -2.39 -0.02 1.72 15 22 H 0.09 1.74 8.12 -2.40 -0.02 1.72 15 23 H 0.15 1.52 8.14 -2.39 -0.02 1.50 15 24 H 0.21 7.25 6.84 -2.91 -0.02 7.23 15 25 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 26 H 0.01 0.29 8.14 -2.39 -0.02 0.28 15 27 H 0.09 4.72 5.95 -2.39 -0.01 4.70 15 28 H 0.34 11.66 9.08 -89.69 -0.81 10.85 15 29 H 0.32 12.79 7.61 -89.70 -0.68 12.11 15 Total: -1.00 -58.37 265.72 0.44 -57.93 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.30 Total: 25.79 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.74 Total: -0.15 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -4.74 Total: -124.92 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.29 Total: -0.67 kcal Total: -58.37 0.44 -57.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120229.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.557 kcal (2) G-P(sol) polarization free energy of solvation -58.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds