Wall clock time and date at job start Mon Mar 30 2020 04:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76193 * 100.00044 * 2 1 4 4 N 1.32801 * 119.66484 * 179.72942 * 3 2 1 5 5 C 1.32376 * 119.45376 * 179.77322 * 4 3 2 6 6 C 1.38765 * 118.83538 * 0.48839 * 5 4 3 7 7 C 1.50696 * 120.34630 * 179.72821 * 6 5 4 8 8 H 1.09000 * 109.47026 * 155.02242 * 7 6 5 9 9 C 1.50704 * 109.47106 * 35.02612 * 7 6 5 10 10 H 1.07999 * 119.99712 * 269.40050 * 9 7 6 11 11 C 1.37872 * 119.99896 * 89.40615 * 9 7 6 12 12 N 1.31521 * 120.00001 * 6.46732 * 11 9 7 13 13 Si 1.86803 * 119.99991 * 186.46850 * 11 9 7 14 14 H 1.48497 * 109.46997 * 59.99898 * 13 11 9 15 15 H 1.48498 * 109.46786 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47189 * 299.99841 * 13 11 9 17 17 C 1.52999 * 109.47353 * 275.02449 * 7 6 5 18 18 N 1.46896 * 109.47330 * 185.29762 * 17 7 6 19 19 N 1.32183 * 119.30295 * 359.75407 * 6 5 4 20 20 N 1.28744 * 120.49076 * 0.02562 * 19 6 5 21 21 H 1.09001 * 109.47088 * 299.99830 * 1 2 3 22 22 H 1.09001 * 109.47350 * 60.00128 * 1 2 3 23 23 H 1.09004 * 109.47283 * 180.02562 * 1 2 3 24 24 H 1.07999 * 120.57745 * 180.22163 * 5 4 3 25 25 H 0.96998 * 119.99538 * 179.97438 * 12 11 9 26 26 H 1.08999 * 109.47055 * 305.29952 * 17 7 6 27 27 H 1.09009 * 109.47115 * 65.29984 * 17 7 6 28 28 H 1.00906 * 110.99797 * 56.05025 * 18 17 7 29 29 H 1.00899 * 111.00552 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 3.3665 2.1821 0.0054 5 6 3.5916 3.4865 0.0009 6 6 2.5075 4.3527 0.0008 7 6 2.7245 5.8440 0.0018 8 1 1.8552 6.3379 -0.4323 9 6 3.9487 6.1740 -0.8128 10 1 4.9168 6.2240 -0.3367 11 6 3.8327 6.4123 -2.1658 12 7 2.6429 6.4774 -2.7225 13 14 5.3655 6.6425 -3.2084 14 1 6.2056 5.4205 -3.1300 15 1 4.9724 6.8825 -4.6202 16 1 6.1370 7.8068 -2.7041 17 6 2.9222 6.3297 1.4392 18 7 3.0070 7.7961 1.4532 19 7 1.2825 3.8561 0.0004 20 7 1.0940 2.5825 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 4.6013 3.8698 0.0016 25 1 2.5614 6.6454 -3.6743 26 1 2.0787 6.0086 2.0504 27 1 3.8436 5.9085 1.8415 28 1 2.1918 8.2096 1.0260 29 1 3.1374 8.1418 2.3922 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120230.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:32 Heat of formation + Delta-G solvation = 62.285711 kcal Electronic energy + Delta-G solvation = -14870.160486 eV Core-core repulsion = 12341.019572 eV Total energy + Delta-G solvation = -2529.140914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95966 -35.77912 -34.24175 -32.59498 -32.01833 -29.13115 -28.16080 -25.15404 -24.52020 -23.81299 -20.40858 -18.30115 -17.95428 -16.55741 -15.47748 -15.22341 -14.94005 -14.67580 -13.84910 -13.75024 -13.38880 -13.05193 -12.85865 -12.46222 -12.19898 -11.48291 -11.22135 -11.08601 -10.93367 -10.78294 -10.70087 -10.48519 -10.13510 -9.47593 -9.32205 -8.73030 -8.48868 -7.85621 -7.56494 -6.21643 -4.26368 1.18173 1.37199 1.43512 2.27187 3.25330 3.30946 3.32877 4.09354 4.29400 4.44053 4.81510 4.98287 5.17136 5.27058 5.27960 5.43313 5.83237 5.88053 6.00173 6.10391 6.26220 6.58180 6.78346 7.42755 7.48522 7.72640 7.85056 8.12235 8.16967 8.81395 9.05470 9.38644 10.86678 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.007636 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.687087 B = 3665.907007 C = 4217.189026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.012 6.012 3 C 0.193 3.807 4 N -0.468 5.468 5 C 0.157 3.843 6 C 0.075 3.925 7 C 0.082 3.918 8 H 0.083 0.917 9 C -0.500 4.500 10 H 0.067 0.933 11 C 0.069 3.931 12 N -0.880 5.880 13 Si 0.893 3.107 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.085 3.915 18 N -0.828 5.828 19 N -0.203 5.203 20 N -0.294 5.294 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.191 0.809 25 H 0.265 0.735 26 H -0.001 1.001 27 H 0.058 0.942 28 H 0.339 0.661 29 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -7.157 6.052 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.217 5.783 3 C -0.185 4.185 4 N -0.190 5.190 5 C -0.024 4.024 6 C -0.077 4.077 7 C 0.061 3.939 8 H 0.101 0.899 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.136 4.136 12 N -0.516 5.516 13 Si 0.721 3.279 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.047 4.047 18 N -0.357 5.357 19 N -0.052 5.052 20 N -0.143 5.143 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.122 0.878 24 H 0.208 0.792 25 H 0.075 0.925 26 H 0.017 0.983 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.603 -8.678 5.416 10.354 hybrid contribution -0.078 1.513 -0.293 1.543 sum -1.681 -7.165 5.123 8.967 Atomic orbital electron populations 1.23522 0.94388 1.05986 1.07316 1.85416 1.06644 0.94286 1.91912 1.26097 0.90450 1.01684 1.00270 1.69101 1.20828 1.16652 1.12371 1.24221 1.02774 0.87383 0.88027 1.24970 0.89786 1.03023 0.89877 1.17918 1.01297 0.82443 0.92255 0.89887 1.20770 0.92831 1.48038 0.92240 0.91491 1.25065 0.96084 0.94067 0.98373 1.69939 1.22330 1.47161 1.12173 0.86614 0.83111 0.79058 0.79162 1.19989 1.21325 1.19671 1.21704 0.97720 0.88313 0.96938 1.58447 1.47807 1.06305 1.23095 1.73542 1.21777 1.03225 1.06624 1.74032 1.28366 0.98792 1.13082 0.89214 0.89120 0.87811 0.79193 0.92482 0.98275 0.92403 0.84876 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.64 101.05 0.97 -0.74 15 2 S -0.01 -0.18 22.91 -107.50 -2.46 -2.64 15 3 C 0.19 3.87 7.92 -90.46 -0.72 3.16 15 4 N -0.47 -9.73 10.51 -13.29 -0.14 -9.87 15 5 C 0.16 3.30 10.41 -17.12 -0.18 3.12 15 6 C 0.07 1.69 5.86 -82.25 -0.48 1.21 15 7 C 0.08 1.89 2.35 -92.92 -0.22 1.67 15 8 H 0.08 2.17 7.38 -51.93 -0.38 1.79 15 9 C -0.50 -12.29 6.66 -34.44 -0.23 -12.52 15 10 H 0.07 1.61 7.82 -52.49 -0.41 1.20 15 11 C 0.07 1.79 5.45 -17.82 -0.10 1.69 15 12 N -0.88 -24.40 12.85 55.43 0.71 -23.69 15 13 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 15 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 17 C 0.08 1.64 6.14 -3.83 -0.02 1.62 15 18 N -0.83 -14.80 9.35 -10.37 -0.10 -14.90 15 19 N -0.20 -4.71 11.56 33.66 0.39 -4.32 15 20 N -0.29 -6.28 10.33 30.23 0.31 -5.97 15 21 H 0.09 1.10 8.12 -51.92 -0.42 0.68 15 22 H 0.09 1.17 8.12 -51.92 -0.42 0.75 15 23 H 0.10 0.90 8.14 -51.91 -0.42 0.47 15 24 H 0.19 3.64 7.28 -52.49 -0.38 3.25 15 25 H 0.27 7.12 8.31 -40.82 -0.34 6.79 15 26 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 15 27 H 0.06 1.08 8.14 -51.92 -0.42 0.65 15 28 H 0.34 5.99 8.99 -39.29 -0.35 5.63 15 29 H 0.32 4.70 9.08 -39.29 -0.36 4.34 15 LS Contribution 272.33 15.07 4.10 4.10 Total: -1.00 -29.07 272.33 -6.31 -35.37 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.13 Total: 7.41 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.97 Total: -0.80 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 1.18 Total: -58.76 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.46 Total: -2.64 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.07 -6.31 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120230.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.660 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds